Jatropha Genome Database

JcCB0979461.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0979461.10 - phase: 2 /partial
         (123 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01031729001 assembled CDS                                       150   2e-37
GSVIVT01014220001 assembled CDS                                        88   1e-18

>GSVIVT01031729001 assembled CDS
          Length = 447

 Score =  150 bits (378), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 74/113 (65%), Positives = 87/113 (76%)

Query: 11  LQGEIAGAQRXXXXXXXXXXXXEQDAAGRIYGAVCSSPAVLHNQGLLKDKKATAHPSVEN 70
           L G IAGA+R            EQ +AGRIYGA+CSSP VLH QGLLK K+ATAHPSV +
Sbjct: 330 LPGGIAGAERLHKSKVLKKMLKEQGSAGRIYGAICSSPTVLHRQGLLKGKRATAHPSVAS 389

Query: 71  QLSNNVINDAKVVIDGKVITSKGHATVTDFAMAIVSKLFGHARARSVAEGLVF 123
           +L+N V+  A+VVIDGK+ITS+G AT  +FA+AIVSKLF HARARSVAEGLVF
Sbjct: 390 KLTNEVVEGARVVIDGKLITSRGLATAIEFALAIVSKLFSHARARSVAEGLVF 442



 Score = 69.7 bits (169), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 38/120 (31%), Positives = 64/120 (53%), Gaps = 1/120 (0%)

Query: 5   FFFLSELQGEIAGAQRXXXXXXXXXXXXEQDAAGRIYGAVCSSPAV-LHNQGLLKDKKAT 63
            F L  L G + G+ R            +     R+YGA+C++PA+ L   GLL+ K+ T
Sbjct: 121 IFDLIALPGGMPGSARLRDSEILRKITSKHAEEKRLYGAICAAPAITLQPWGLLRRKQMT 180

Query: 64  AHPSVENQLSNNVINDAKVVIDGKVITSKGHATVTDFAMAIVSKLFGHARARSVAEGLVF 123
            HP+  ++L       + + + G++ TS+G  T  +FA+A+V +LFG + A+ V E L+ 
Sbjct: 181 CHPAFMDKLPTFRAVKSNLQVSGELTTSRGPGTAFEFALALVDQLFGESVAKEVGELLLM 240


>GSVIVT01014220001 assembled CDS
          Length = 393

 Score = 87.8 bits (216), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 47/122 (38%), Positives = 73/122 (59%), Gaps = 1/122 (0%)

Query: 3   RFFFFLSELQGEIAGAQRXXXXXXXXXXXXEQDAAGRIYGAVCSSPA-VLHNQGLLKDKK 61
           +  + L  L G + GAQ              Q  + + YGA+C+SPA VL   GLLK KK
Sbjct: 269 KLSYDLIVLPGGLGGAQAFASSEKLVNLLKNQRESNKPYGAICASPALVLEPHGLLKGKK 328

Query: 62  ATAHPSVENQLSNNVINDAKVVIDGKVITSKGHATVTDFAMAIVSKLFGHARARSVAEGL 121
           ATA P++ ++LS+    + +V++DG +ITS+G  T  +FA+AI+ K FGH +A  +A+ +
Sbjct: 329 ATAFPALCSKLSDQSEIENRVLVDGNLITSRGPGTSMEFALAIIEKFFGHGKALELAKVM 388

Query: 122 VF 123
           +F
Sbjct: 389 LF 390



 Score = 72.4 bits (176), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 42/120 (35%), Positives = 67/120 (55%), Gaps = 2/120 (1%)

Query: 6   FFLSELQGEIAGAQRXXXXXXXXXXXXEQDAAGRIYGAVCSSPAV-LHNQGLLKDKKATA 64
           F L  L G + GA              +  A G++Y  +C++PAV L + GL+K  KAT 
Sbjct: 68  FDLISLPGGMPGAATLRDCGMLESMVKKHAADGQLYAGICAAPAVALGSWGLMKGLKATC 127

Query: 65  HPSVENQLSNNVIN-DAKVVIDGKVITSKGHATVTDFAMAIVSKLFGHARARSVAEGLVF 123
           +PS   QLS+     +++V  DGKV+TS+G  T  +F++++V +L+G  +A  V+  LV 
Sbjct: 128 YPSFMEQLSSTATTVESRVQQDGKVVTSRGPGTTMEFSVSLVEQLYGKEKANEVSGPLVM 187