Jatropha Genome Database

JcCB0971801.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0971801.10 + phase: 0 /partial
         (100 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01017334001 assembled CDS                                       171   6e-44
GSVIVT01030235001 assembled CDS                                        61   9e-11
GSVIVT01030237001 assembled CDS                                        59   6e-10
GSVIVT01029832001 assembled CDS                                        58   7e-10
GSVIVT01022520001 assembled CDS                                        57   1e-09
GSVIVT01019427001 assembled CDS                                        57   2e-09
GSVIVT01019780001 assembled CDS                                        54   1e-08
GSVIVT01019781001 assembled CDS                                        49   3e-07
GSVIVT01015066001 assembled CDS                                        48   1e-06

>GSVIVT01017334001 assembled CDS
          Length = 207

 Score =  171 bits (433), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 78/100 (78%), Positives = 89/100 (89%)

Query: 1   RPSLHNRWEGYLGERSDGQKPIFSVRRSSMIGRCSVAVEVYGNPGEEYQIEGSFANRCCT 60
           RPSLH RWEG+LGE  DG+KPIFSV+RSS+IGR  V VE+Y NPGE+YQIEGSF++RCCT
Sbjct: 76  RPSLHQRWEGFLGEGIDGKKPIFSVKRSSIIGRSGVTVEMYSNPGEDYQIEGSFSHRCCT 135

Query: 61  IFNTVKESVAEIRRKVDASTNVVLGKDVFSLCLKPGFDAA 100
           IFN  KESVAEIRRKVDAST+V+LGKDVF+LCLKPGF  A
Sbjct: 136 IFNAAKESVAEIRRKVDASTHVMLGKDVFTLCLKPGFGGA 175


>GSVIVT01030235001 assembled CDS
          Length = 192

 Score = 61.2 bits (147), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 64/106 (60%), Gaps = 12/106 (11%)

Query: 3   SLHNRWEGYLGERSDGQKPIFSVRRSSMIG-RCSVAVEVYGNPGEE---YQIEGSFANRC 58
           S+H RW+ + GE SD +  +FS + SS+I  +  + V +  N  EE   ++++GS+ +R 
Sbjct: 73  SMHRRWQVFRGESSDPKDLLFSTKLSSIIQLKTGLDVFLAANTKEEICDFKLKGSWFDRS 132

Query: 59  CTIF----NTVKESVAEIRRKVDASTNVVLGKDVFSLCLKPGFDAA 100
           CT++    NT+   +A++ +K +  + VVLGKD F++ + P  D A
Sbjct: 133 CTVYAGNSNTI---IAQMHKKHNVQS-VVLGKDTFAVTVYPNVDYA 174


>GSVIVT01030237001 assembled CDS
          Length = 167

 Score = 58.5 bits (140), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 63/106 (59%), Gaps = 12/106 (11%)

Query: 3   SLHNRWEGYLGERSDGQKPIFSVRRSSMIG-RCSVAVEVYGNPGEE---YQIEGSFANRC 58
           S+H RW+ + GE SD +  +FS + SS+I  + ++ V +  N  EE   +++ GS+ +R 
Sbjct: 51  SMHRRWKVFRGESSDPKDLLFSTKLSSIIQLKTALNVFLAANTKEEVCDFKLRGSWFDRS 110

Query: 59  CTIF----NTVKESVAEIRRKVDASTNVVLGKDVFSLCLKPGFDAA 100
           CT++    NT+   +A++ +K +  + VVLGKD F++ +    D A
Sbjct: 111 CTVYAGNSNTI---IAKMHKKYNVQS-VVLGKDTFAVTVYTNVDYA 152


>GSVIVT01029832001 assembled CDS
          Length = 187

 Score = 58.2 bits (139), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 42/110 (38%), Positives = 61/110 (55%), Gaps = 14/110 (12%)

Query: 3   SLHNRWEGYLGERSDGQ-----KPIFSVRR-SSMIGRCSVAVEVYGNPGE------EYQI 50
           ++  +W GY GE   G+     K +FS+RR S +I       EV+    +      +++I
Sbjct: 55  NMQYQWNGYKGEGGCGKSLSSSKVLFSMRRRSGLIQSKQEEAEVFMGGAKKQRTTPDFRI 114

Query: 51  EGSFANRCCTIFNTVK-ESVAEIRRKVDASTNVVLGKDVFSLCLKPGFDA 99
           EGSF  R C I + V  E VA+I RK   +T V+L  DVFSL ++PGFD+
Sbjct: 115 EGSFRRRNCKIRSAVTGELVAKIARK-KVNTTVLLADDVFSLAVQPGFDS 163


>GSVIVT01022520001 assembled CDS
          Length = 200

 Score = 57.4 bits (137), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 52/103 (50%), Gaps = 8/103 (7%)

Query: 1   RPSLHNRWEGYLGERSDGQKPIFSVRRSSMIGRCSVAVEVYGNPGEE-----YQIEGSFA 55
           R SL + W  Y GE +    P F +R+   +        V G          Y+IEGS++
Sbjct: 85  RLSLGDNWLVYDGETA--ANPRFQMRKHLNLLSSKSLARVSGGSSSSMRKAMYEIEGSYS 142

Query: 56  NRCCTIFNTVKESVAEIRRKVDASTNVVLGKDVFSLCLKPGFD 98
            RCC +++  +  VAEI+RK +A   V LG DVF L ++P  D
Sbjct: 143 QRCCAVYDERRRCVAEIKRK-EAMAGVALGVDVFRLIVQPEMD 184


>GSVIVT01019427001 assembled CDS
          Length = 220

 Score = 57.0 bits (136), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/106 (35%), Positives = 54/106 (50%), Gaps = 14/106 (13%)

Query: 8   WEGYLGERSD---------GQKPIFSVRRSSMIGRCSVAVEVY---GNPGEEY--QIEGS 53
           W  Y GE  D          ++PI SV++   I   +  V  Y   GN  + Y  +IEGS
Sbjct: 100 WHVYEGEVGDTSRTKRPSSSKQPICSVKKHINILHANHNVLAYVFLGNSDKRYAYRIEGS 159

Query: 54  FANRCCTIFNTVKESVAEIRRKVDASTNVVLGKDVFSLCLKPGFDA 99
           +ANR C + +  +  VAEI+RK   +  V  G +VF L + PGFD+
Sbjct: 160 YANRSCKVLDKSRRVVAEIKRKEAMNEGVSFGVEVFLLIVCPGFDS 205


>GSVIVT01019780001 assembled CDS
          Length = 399

 Score = 53.9 bits (128), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/100 (36%), Positives = 52/100 (52%), Gaps = 7/100 (7%)

Query: 7   RWEGYL--GERSDGQKPIFSVRRSSMIGRCSVAVEVYGNPGEE----YQIEGSFANRCCT 60
           RWEGY   G ++D QKP F VR+   I     + EV   P E     Y+I+G        
Sbjct: 285 RWEGYKCNGSKADSQKPCFQVRKHCRILGGGSSCEVTVRPNEAQSCYYRIQGLAGKSTFK 344

Query: 61  IFNTVKESVAEIRRKVDASTNVVLGKDVFSLCLKPGFDAA 100
           I N+    +AE+++K   S+ VVLG DV +L ++P  D +
Sbjct: 345 IVNSEGGVMAEVKQK-QTSSGVVLGDDVLNLVVEPHVDHS 383



 Score = 50.4 bits (119), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/100 (35%), Positives = 49/100 (49%), Gaps = 7/100 (7%)

Query: 7   RWEGYL--GERSDGQKPIFSVRRSSMIGRCSVAVEVYGNPGE----EYQIEGSFANRCCT 60
           RWEGY   G +   QKP F VR+   I     + EV   P E     Y+I+G        
Sbjct: 88  RWEGYKCSGSKVGSQKPCFQVRKHCRILGGGSSCEVTVRPNEAQSYHYRIQGLAGKSTFK 147

Query: 61  IFNTVKESVAEIRRKVDASTNVVLGKDVFSLCLKPGFDAA 100
           I N+    +AE+++K   S+ VVLG DV  L ++P  D +
Sbjct: 148 IVNSEGGVMAEVKQK-QTSSGVVLGDDVLDLVVEPHVDHS 186


>GSVIVT01019781001 assembled CDS
          Length = 210

 Score = 49.3 bits (116), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 52/98 (53%), Gaps = 7/98 (7%)

Query: 7   RWEGYL--GERSDGQKPIFSVRRSSMI--GRCSVAVEVYGNPGEEY--QIEGSFANRCCT 60
           RWEGY   G + + QKP F VR++  I  G  S  V V  N  + Y  +I+G        
Sbjct: 90  RWEGYKSNGSKGNNQKPWFQVRKNCRILGGGSSCQVTVRPNEAQSYCYRIQGLTGKSAFK 149

Query: 61  IFNTVKESVAEIRRKVDASTNVVLGKDVFSLCLKPGFD 98
           I ++    +AE+ +K   S+ VVLG+DV +L ++P  D
Sbjct: 150 IVDSQGGLLAEVEQK-QTSSGVVLGEDVLNLVVEPHVD 186


>GSVIVT01015066001 assembled CDS
          Length = 208

 Score = 47.8 bits (112), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 57/106 (53%), Gaps = 11/106 (10%)

Query: 3   SLHNRWEGYLGERSDGQKPIFSVRR-SSMIGRCSVAVEVY-----GNPGEEYQIEGSFAN 56
           S+H +W+GY  +    QK +FS++   S + R ++ +        G+   +++I G F +
Sbjct: 87  SIHGQWKGYSFDYEGLQKLVFSLKEPKSCLARNNITIRTSIEHNRGHKNWDFEINGYFPD 146

Query: 57  RCCTIFNTVKESVAE--IRRKVDASTNVVLGKDVFSLCLKPGFDAA 100
           R C+I ++    VA+  ++++VD        KD++ + +KPG D A
Sbjct: 147 RDCSIVDSKGNIVAQVGVKKEVDEFMG---SKDLYHVVIKPGIDQA 189