Jatropha Genome Database

JcCB0969321.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0969321.10 - phase: 0 /partial/short
         (39 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01003724001 assembled CDS                                        54   1e-08

>GSVIVT01003724001 assembled CDS
          Length = 381

 Score = 54.3 bits (129), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 28/37 (75%), Positives = 31/37 (83%), Gaps = 1/37 (2%)

Query: 1  MENSRNRRVEKRGYEQSVEDESDHLPDPKKAKLPALA 37
          ME SR+RRV+KRGYEQSVED+ D LP  KK KLPALA
Sbjct: 1  MEGSRSRRVDKRGYEQSVEDQDD-LPGSKKPKLPALA 36