Jatropha Genome Database

JcCB0960711.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0960711.10 - phase: 0 /pseudo
         (208 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01012662001 assembled CDS                                       205   1e-53
GSVIVT01030482001 assembled CDS                                       198   1e-51
GSVIVT01012664001 assembled CDS                                        72   1e-13
GSVIVT01023937001 assembled CDS                                        47   8e-06

>GSVIVT01012662001 assembled CDS
          Length = 650

 Score =  205 bits (522), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 97/185 (52%), Positives = 128/185 (69%), Gaps = 1/185 (0%)

Query: 23  EAKCKSGCELSLASYNVWEGVNLTYISNLFXPNHPSNSPFTIPNVTNQDSILVDTRLNIP 82
           E+KC   C+L+LASYN+W+GV+L +I+  F  +      F  P +TN D I+   R+N+P
Sbjct: 53  ESKCSRTCDLALASYNLWKGVDLNFIATTFSRDVSEIQSFN-PQITNIDLIIAGERVNVP 111

Query: 83  FSCDCLNGDFLGHTFKYTTQPGDTYDRIAKYAFANLTTEDWVHRVNIYKTTRIPDYVPIN 142
           FSC C++ +FLG TF Y+ +  DTY  IA+  FANLTT +W+ R N Y  T IP   PIN
Sbjct: 112 FSCGCIDREFLGTTFVYSAKQNDTYSIIAEKYFANLTTVEWLQRFNTYAPTNIPIDAPIN 171

Query: 143 VTVNCSCGDKRVSKDYGLFTTYPLGAADNLSSLAEESGVRPDLLQRYNPGKNFSEGSGII 202
           VTVNCSCG+  VSKDYGLF TYPL   +NLS++A +SG+ P LLQ YNP  +FS GSG++
Sbjct: 172 VTVNCSCGNSSVSKDYGLFVTYPLEPGENLSTIANQSGLPPQLLQDYNPDSDFSRGSGLV 231

Query: 203 FVPAK 207
           F+P K
Sbjct: 232 FIPGK 236



 Score = 67.0 bits (162), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 28/50 (56%), Positives = 39/50 (78%)

Query: 158 YGLFTTYPLGAADNLSSLAEESGVRPDLLQRYNPGKNFSEGSGIIFVPAK 207
           YGLF TYPL   +NLS++A  +G+  DL++RYNP  +FS G+G++FVPAK
Sbjct: 3   YGLFATYPLRDGENLSTVAAAAGITDDLVRRYNPAADFSAGTGLVFVPAK 52


>GSVIVT01030482001 assembled CDS
          Length = 625

 Score =  198 bits (504), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 94/187 (50%), Positives = 126/187 (67%), Gaps = 3/187 (1%)

Query: 23  EAKCKSGCELSLASYNVWEGVNLTYISNLFXPNHPSNSPFTIPNVTNQDSILVDTRLNIP 82
           +++C  GC+L+L SY VW+G NLT+IS LF         +    + NQDS+  DTR+ +P
Sbjct: 20  DSQCSRGCDLALGSYYVWQGSNLTFISQLFQTTISEILSYN-SQIANQDSVEADTRIRVP 78

Query: 83  FS-CDCLNGDFLGHTFKYTTQPGDTYDRIAKYAFANLTTEDWVHRVNIYKTTRIPDY-VP 140
           +S CDC+NG+FLG  F YT Q GDTYD +A+  ++NLTT  W+   N Y   +IPD    
Sbjct: 79  YSSCDCINGEFLGKVFNYTVQSGDTYDLVAETYYSNLTTSAWLQNFNSYAANQIPDTDAY 138

Query: 141 INVTVNCSCGDKRVSKDYGLFTTYPLGAADNLSSLAEESGVRPDLLQRYNPGKNFSEGSG 200
           +NVT+NCSCG+  VSKDYGLF +YPL   DNL+S+AE  G+   LLQ YNP  NFS GSG
Sbjct: 139 LNVTLNCSCGNSTVSKDYGLFLSYPLRPEDNLTSVAESEGLNASLLQSYNPDSNFSAGSG 198

Query: 201 IIFVPAK 207
           ++++P K
Sbjct: 199 LVYIPTK 205


>GSVIVT01012664001 assembled CDS
          Length = 77

 Score = 72.4 bits (176), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 34/55 (61%), Positives = 42/55 (76%)

Query: 153 RVSKDYGLFTTYPLGAADNLSSLAEESGVRPDLLQRYNPGKNFSEGSGIIFVPAK 207
           RVSK YGLF TYPL   ++LSS+A ESG+   LLQ YNPG +FS GSG++F+P K
Sbjct: 4   RVSKKYGLFVTYPLQPGESLSSIANESGLPSKLLQDYNPGVDFSLGSGLVFIPGK 58


>GSVIVT01023937001 assembled CDS
          Length = 357

 Score = 46.6 bits (109), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 62/145 (42%), Gaps = 12/145 (8%)

Query: 71  DSILVDTRLNIPFSCDCLNGDFLG-HTFKYTTQPGDTYDRIAKYAFANLTTEDWVHRV-N 128
            S+    ++ IPF C C NG  +  H   YT Q  D    IA   FA L T   +  V N
Sbjct: 80  QSVAAKDKIVIPFRCRCSNGTGISNHRPVYTVQKDDGLYHIAAEVFAGLVTYQEIQAVNN 139

Query: 129 IYKTTRIPDYVPINVTVNCSCGDKRVSK--DYGLFTTYPLGAADNLSSLAEESGVRPDLL 186
           I     I     + + + CSC +   SK   YG    + + A  ++  +AEE G   + L
Sbjct: 140 ISDANLIEVGQELWIPLPCSCDEVNGSKVVHYG----HVVEAGSSVELIAEEYGTTQETL 195

Query: 187 QRYN---PGKNFSEGSGIIFVPAKG 208
            R N     KN   G+ ++ VP K 
Sbjct: 196 LRLNGITDPKNLQAGA-VLDVPLKA 219