Jatropha Genome Database

JcCB0942771.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0942771.10 + phase: 0 /pseudo/partial
         (59 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01016288001 assembled CDS                                        71   1e-13
GSVIVT01025176001 assembled CDS                                        70   2e-13

>GSVIVT01016288001 assembled CDS
          Length = 436

 Score = 70.9 bits (172), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 35/41 (85%), Positives = 39/41 (95%)

Query: 2   KYGVRAVKGGGRSSARETIGRVAPGAIAKKILKQFSGTEVV 42
           KYGVR+V+GGGRSSARETIGRVA GA+AKKILK FSGTEV+
Sbjct: 162 KYGVRSVQGGGRSSARETIGRVAAGAVAKKILKNFSGTEVL 202


>GSVIVT01025176001 assembled CDS
          Length = 444

 Score = 70.1 bits (170), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 34/41 (82%), Positives = 39/41 (95%)

Query: 2   KYGVRAVKGGGRSSARETIGRVAPGAIAKKILKQFSGTEVV 42
           KYGVRA++GGGRSSARETI RVA GA+AKKILK+FSGTEV+
Sbjct: 157 KYGVRAIQGGGRSSARETIARVAAGAVAKKILKKFSGTEVL 197