Jatropha Genome Database

JcCB0940751.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0940751.10 + phase: 0 /pseudo/partial
         (247 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01026026001 assembled CDS                                        56   1e-08
GSVIVT01031692001 assembled CDS                                        55   2e-08
GSVIVT01026027001 assembled CDS                                        55   3e-08

>GSVIVT01026026001 assembled CDS
          Length = 243

 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/101 (37%), Positives = 53/101 (52%), Gaps = 8/101 (7%)

Query: 128 SFGFGYDPISDDYKVVRLGQYLDLSDGHFETETLVCNLKDNAWREIPGMSYMLGIDQKMG 187
           S+ FGYD I+DDYKVVRL     ++D  +E    V +L+ NAWR+I    Y L  D+  G
Sbjct: 32  SYAFGYDSITDDYKVVRLVC-CSINDS-YEYHVEVFSLRSNAWRKIRSFPYFLFTDE-AG 88

Query: 188 VLVGDALHWLVSLKFMLINPNQ--IVGFDVRVEQFREVPAP 226
             V  +++W VS      N +   I   D+  E +  VP P
Sbjct: 89  KHVNGSINWAVSRD---KNNDHWFIASLDLATESYEVVPQP 126


>GSVIVT01031692001 assembled CDS
          Length = 357

 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/112 (34%), Positives = 55/112 (49%), Gaps = 9/112 (8%)

Query: 130 GFGYDPISDDYKVVRLGQYLDLSDGHFETETLVCNLKDNAWREIPGMSYMLGIDQKMGVL 189
           GFGYD  +DDYKV      + + + +FET   V +LK N W+ I    +         VL
Sbjct: 151 GFGYDSFADDYKVF----LVSMLNPNFETVVDVFSLKSNKWKRIQEKHHTRAARMCATVL 206

Query: 190 VGDALHWLVSLKFMLINPNQIVGFDVRVEQFREVPAPRIFVDQNAYASLEVV 241
            G ALHW+     +    + I+ FD   E+FRE+  PR   ++  Y  L VV
Sbjct: 207 HG-ALHWVAYDPILGF--DTIMAFDFEKERFREMAIPR--EEEELYVKLRVV 253


>GSVIVT01026027001 assembled CDS
          Length = 372

 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 53/104 (50%), Gaps = 14/104 (13%)

Query: 128 SFGFGYDPISDDYKVVRLGQYLDLSDGHFETETLVCNLKDNAWREIPGMSYMLGIDQKMG 187
           ++GFGYD I+DDYKV R+G Y      ++E +  V +L+ N WR+I      L  D+   
Sbjct: 144 AYGFGYDSIADDYKVTRVGCY--CIGRYYEYQVRVFSLRGNVWRKIENFPCYLFTDEP-- 199

Query: 188 VLVGDALHWLVSLKFMLINPNQ-----IVGFDVRVEQFREVPAP 226
                 +H   S+ F  +  ++     +VG D+  E +R VP P
Sbjct: 200 -----GIHVNGSINFGGVGDSENYYWSVVGLDLASESYRMVPLP 238