Jatropha Genome Database

JcCB0907471.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0907471.10 - phase: 2 /partial
         (85 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01019677001 assembled CDS                                       103   2e-23
GSVIVT01001899001 assembled CDS                                        51   1e-07

>GSVIVT01019677001 assembled CDS
          Length = 944

 Score =  103 bits (257), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 48/83 (57%), Positives = 61/83 (73%)

Query: 3   ASWEKYVGQGSDDLLVDGQSPDSQDFHVAPSGMADRPGPINNSEIVENGSGGESDDLELA 62
            SW++Y+GQG+ +  ++G   DSQ     PS  A+RPGPI+NS+IV NG+  E DDLE+ 
Sbjct: 55  TSWQRYIGQGNGEYPINGHLSDSQRLDAVPSKTAERPGPIDNSDIVLNGNECELDDLEIL 114

Query: 63  RTLLEGRDYVLVPQKVWEKLVQW 85
           RTL EGRDYVLVPQ+VWEKL  W
Sbjct: 115 RTLEEGRDYVLVPQEVWEKLFDW 137


>GSVIVT01001899001 assembled CDS
          Length = 955

 Score = 50.8 bits (120), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 3/86 (3%)

Query: 1   WYASWEKYVGQGSDDLLVDGQSPDSQDFHVAPSGMADRPGPINNSEIVENGSGGESD-DL 59
           W+  W +YV Q   + +    S  S+      S    RP  I+NS+++ + +  +S   +
Sbjct: 48  WWQQWLEYVNQDQANNI--DVSSLSEHCDSVSSSDVKRPSVIDNSDLIYDMTSEDSTMGI 105

Query: 60  ELARTLLEGRDYVLVPQKVWEKLVQW 85
           EL  TL+EGRDY+L+PQ+VW +L  W
Sbjct: 106 ELHDTLVEGRDYILLPQEVWNQLYAW 131