Jatropha Genome Database

JcCB0902911.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0902911.10 - phase: 1 /partial
         (100 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01016375001 assembled CDS                                       153   1e-38

>GSVIVT01016375001 assembled CDS
          Length = 553

 Score =  153 bits (387), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 76/97 (78%), Positives = 83/97 (85%), Gaps = 10/97 (10%)

Query: 2   QVKWLLKLSQIAEVIEVPNFSEEAQSFLQGLIDGFSLDDALEVKNIEKVTNHDVKAVEYF 61
           ++KWLLKLSQI EV EVP FS+EAQS+LQGL+DGFS+ DALEVKNIEKVTNHDVKAVEYF
Sbjct: 121 EIKWLLKLSQIPEVTEVPQFSKEAQSYLQGLVDGFSMSDALEVKNIEKVTNHDVKAVEYF 180

Query: 62  LKKKCQSHPEIAK----------SEDINNLAHALMLK 88
           LK+KCQSHPEIAK          SEDINNLAHALMLK
Sbjct: 181 LKQKCQSHPEIAKVLEFFHFACTSEDINNLAHALMLK 217