Jatropha Genome Database

JcCB0902641.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0902641.10 - phase: 0 /pseudo/partial
         (104 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01003839001 assembled CDS                                        94   1e-20

>GSVIVT01003839001 assembled CDS
          Length = 737

 Score = 94.4 bits (233), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 47/60 (78%), Positives = 55/60 (91%)

Query: 3   DLQDALAHRDKELAERDAALNNSKKQIKSIEIKLDSANARHQLEKEAWETNLQNLEESWK 62
           DLQDALA+ DKELA RDAAL+++K+QIKSIE KLDSANAR+Q EKEAWE NLQNLEE+W+
Sbjct: 445 DLQDALANHDKELATRDAALSSAKQQIKSIEKKLDSANARYQSEKEAWEINLQNLEETWR 504