Jatropha Genome Database

JcCB0897851.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0897851.10 + phase: 0 /pseudo/partial
         (117 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01017662001 assembled CDS                                        95   8e-21
GSVIVT01017603001 assembled CDS                                        95   9e-21

>GSVIVT01017662001 assembled CDS
          Length = 1520

 Score = 94.7 bits (234), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 45/64 (70%), Positives = 52/64 (81%)

Query: 1   MNKPEPVQSWSALALIDCLSTLDGLVSFLPREMVVKELIEGKSCLHVAVLMQTNLEIPVL 60
           MNKPEP+QSWSALALIDCL   +GLV+ LP+E VVKEL E +S +HV VLMQ NLEIPVL
Sbjct: 875 MNKPEPMQSWSALALIDCLMAFEGLVTVLPKEAVVKELTEDQSFVHVMVLMQANLEIPVL 934

Query: 61  QFVS 64
           Q  +
Sbjct: 935 QVAA 938


>GSVIVT01017603001 assembled CDS
          Length = 1609

 Score = 94.7 bits (234), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 45/64 (70%), Positives = 52/64 (81%)

Query: 1    MNKPEPVQSWSALALIDCLSTLDGLVSFLPREMVVKELIEGKSCLHVAVLMQTNLEIPVL 60
            MNKPEP+QSWSALALIDCL   +GLV+ LP+E VVKEL E +S +HV VLMQ NLEIPVL
Sbjct: 964  MNKPEPMQSWSALALIDCLMAFEGLVTVLPKEAVVKELTEDQSFVHVMVLMQANLEIPVL 1023

Query: 61   QFVS 64
            Q  +
Sbjct: 1024 QVAA 1027