Jatropha Genome Database

JcCB0897541.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0897541.10 + phase: 2 /pseudo/partial
         (423 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01020689001 assembled CDS                                       655   0.0  
GSVIVT01021204001 assembled CDS                                       312   2e-85
GSVIVT01024613001 assembled CDS                                       172   2e-43
GSVIVT01021205001 assembled CDS                                       129   3e-30

>GSVIVT01020689001 assembled CDS
          Length = 524

 Score =  655 bits (1691), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 314/384 (81%), Positives = 343/384 (89%)

Query: 40  SKAVLLLQIGLRKGSRSFAEARAAGFTEESGTLGDIWETIAGSDLVLLLISDAAQADNYE 99
           +K+ ++++IGLRKGS+SFAEARAAGFTEE+GTLGDI+ETI+GSDLV+LLISD+AQADNYE
Sbjct: 78  AKSNIVVKIGLRKGSKSFAEARAAGFTEENGTLGDIYETISGSDLVMLLISDSAQADNYE 137

Query: 100 KIFSHMKPNSIXXXXXXXXXXXXXXXXXDFPKNISVIAVCPKGMGPSVRRLYVQGKEING 159
           KIFSHMKPNSI                 DFPKNISVIAVCPKGMGPSVRRLYVQGKE+NG
Sbjct: 138 KIFSHMKPNSILGLSHGFLLGHLQSLGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEVNG 197

Query: 160 AGINSSFAVHQDVDGRAADVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHGV 219
           AGINSSFAV QDVDGRA DVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHG+
Sbjct: 198 AGINSSFAVQQDVDGRATDVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHGI 257

Query: 220 VECLFRRYTENGMNEDVAYKNTVEXXXXXXXXXXXXXXMLAVYNSLSDEGKRDFETAYSA 279
           VE LFRRYTE+G +ED+AYKNTVE              MLAVYN+LS++GK++FE AYSA
Sbjct: 258 VESLFRRYTEHGTSEDLAYKNTVECITGIISKTISTQGMLAVYNALSEDGKKEFEAAYSA 317

Query: 280 AYYPCMDILYECYEDVASGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGERVRA 339
           +YYPCMDILYECYEDVASGSEIRSVVLAGRRFYEK+GLPAFPMGKIDQTRMWKVGERVR+
Sbjct: 318 SYYPCMDILYECYEDVASGSEIRSVVLAGRRFYEKDGLPAFPMGKIDQTRMWKVGERVRS 377

Query: 340 TRPKDDLGPLYPFTAGVFVALMMAQIEVLRKKGHSYSEIINESLIEAVDSLNPFMHARGV 399
            RP  DLGPL PFTAGV+VALMMAQIE+LRKKGHSYSEIINES+IE+VDSLNPFMHARGV
Sbjct: 378 VRPAGDLGPLCPFTAGVYVALMMAQIEILRKKGHSYSEIINESVIESVDSLNPFMHARGV 437

Query: 400 SFMVDNCSTTARLGSRKWAPRFDY 423
           SFMVDNCSTTARLGSRKWAPRFDY
Sbjct: 438 SFMVDNCSTTARLGSRKWAPRFDY 461


>GSVIVT01021204001 assembled CDS
          Length = 349

 Score =  312 bits (799), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 175/300 (58%), Positives = 197/300 (65%), Gaps = 30/300 (10%)

Query: 40  SKAVLLLQIGLRKGSRSFAEARAAGFTEESGTLGDIWETIAGSDLVLLLISDAAQADNYE 99
           +K+ ++++IGLRKGSRS AEARAAGFTEE+GTLGDIWETIAGS+LVLLLISD+AQADNYE
Sbjct: 78  AKSDIVVKIGLRKGSRSLAEARAAGFTEENGTLGDIWETIAGSNLVLLLISDSAQADNYE 137

Query: 100 KIFSHMKPNSIXXXXXXXXXXXXXXXXXDFPKNISVIAVCPKGMGPSVRRLYVQGKEING 159
           K+FSHMKPNS+                 DFP+NISVI VCPKGMGPSVRRLYVQGKE+NG
Sbjct: 138 KVFSHMKPNSMLGLSHDFLLGHLQSLGLDFPENISVITVCPKGMGPSVRRLYVQGKEVNG 197

Query: 160 AGINSSFAVHQDVDGRAADVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHGV 219
           AGI+SSFAVHQDVDGRA DVALGWSVALGSPFTFATTLE EY+SDIFGERGILLGAVHGV
Sbjct: 198 AGIDSSFAVHQDVDGRATDVALGWSVALGSPFTFATTLEYEYQSDIFGERGILLGAVHGV 257

Query: 220 VECLFRRYTENGMNEDVAYKNTVEXXXXXXXXXXXXXXMLAVYNSLSDEGKRDFETAYSA 279
           VE LFRR +         Y    +               + V+ S               
Sbjct: 258 VESLFRRTSLQ--RACWLYATPCQRMGKKNLRLHIVPHFIVVWTS--------------- 300

Query: 280 AYYPCMDILYECYEDVASGSEIRSVVLA--GRRFYEKEGLPAFPMGKIDQTRMWKVGERV 337
               CM ++      V      R VVL   G  F  +     F   KIDQTRMWKVGE V
Sbjct: 301 ----CMSVMKMLLVGV------RFVVLCWLGDDFI-RRACQLFQWVKIDQTRMWKVGEHV 349


>GSVIVT01024613001 assembled CDS
          Length = 322

 Score =  172 bits (437), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 95/212 (44%), Positives = 113/212 (53%), Gaps = 43/212 (20%)

Query: 212 LLGAVHGVVECLFRRYTENGMNEDVAYKNTVEXXXXXXXXXXXXXXMLAVYNSLSDEGKR 271
           L   +  + E  FR+YT++G+++D+AYKN +E              MLAVY  L    K+
Sbjct: 87  LTKLISAMTEVFFRKYTKHGISKDLAYKNALECITQIILKIISTRGMLAVYKCLVRRWKK 146

Query: 272 DFETAYSAAYYPCMDILYECYEDVASGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMW 331
            F+  YSA+YY CMDILYECY+DVASG E  S+VL GR FYEK GLPAF MGKI      
Sbjct: 147 KFKAIYSASYYLCMDILYECYKDVASGRETCSIVLTGRHFYEKNGLPAFFMGKIG----- 201

Query: 332 KVGERVRATRPKDDLGPLYPFTAGVFVALMMAQIEVLRKKGHSYSEIINESLIEAVDSLN 391
                                                 + G      INES+IE+VDSLN
Sbjct: 202 --------------------------------------RNGTHTQRKINESVIESVDSLN 223

Query: 392 PFMHARGVSFMVDNCSTTARLGSRKWAPRFDY 423
            F HA  VSFMV NCSTT  L SRKWAPRFDY
Sbjct: 224 LFAHACRVSFMVGNCSTTEHLRSRKWAPRFDY 255


>GSVIVT01021205001 assembled CDS
          Length = 125

 Score =  129 bits (323), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 59/62 (95%), Positives = 61/62 (98%)

Query: 362 MAQIEVLRKKGHSYSEIINESLIEAVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRF 421
           MAQIEVLR+KGHSYSEIINESLIE+VDSLNPFMHARGVSFMVDNCSTTARLGS KWAPRF
Sbjct: 1   MAQIEVLRRKGHSYSEIINESLIESVDSLNPFMHARGVSFMVDNCSTTARLGSGKWAPRF 60

Query: 422 DY 423
           DY
Sbjct: 61  DY 62