Jatropha Genome Database

JcCB0894111.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0894111.10 - phase: 2 /partial
         (233 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01019000001 assembled CDS                                       169   7e-43
GSVIVT01009680001 assembled CDS                                        80   6e-16

>GSVIVT01019000001 assembled CDS
          Length = 492

 Score =  169 bits (429), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 111/233 (47%), Positives = 125/233 (53%), Gaps = 44/233 (18%)

Query: 1   ITHRAFCDALAEESARATQTXXXXXXXXXXXXXQESEPKVQVDXXXXXXXXXXXXXXXXX 60
           ITHRAFCDALAEESA+ TQT              + +PK++                   
Sbjct: 184 ITHRAFCDALAEESAK-TQTQTAVANPNS-----DEDPKIE-------SPPPPPPPPPPP 230

Query: 61  XXXXXQSAGVISSSISPNHSPELPDNPSPIIEEALAPQXXXXXXXXXXXXXXXXXXXXXX 120
                 S  VIS+ + P  SPELP+NP+ I+EE  AP                       
Sbjct: 231 APAVAPSTAVISA-VLPIQSPELPENPTQILEE--AP----------------------- 264

Query: 121 XXXXXXXXXXXXXXXXXXXIQPPQTPAFTDLIRAMAHPDRPADLAPPSSTEPISLCLSTS 180
                                      F+ L R M  PDRP +L P SSTEPISLCLST+
Sbjct: 265 -----PAATGLNASCSSSTSSSSNATGFSGLSRVMTRPDRPTELTPSSSTEPISLCLSTN 319

Query: 181 HGSSIFGTAGQERRQYAPPPQPAMSATALLQKAAQIGAAATNASLLRGFGIVS 233
           HGSSIFGTAGQERRQYAPPPQPAMSATALLQKAAQ+GAAATNASLLRGFGIVS
Sbjct: 320 HGSSIFGTAGQERRQYAPPPQPAMSATALLQKAAQMGAAATNASLLRGFGIVS 372


>GSVIVT01009680001 assembled CDS
          Length = 496

 Score = 80.5 bits (197), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 52/96 (54%), Positives = 62/96 (64%), Gaps = 5/96 (5%)

Query: 141 QPPQTPA-FTDLIRAMAHPDRPADLAPPSSTEPISLCLSTSHGSSI----FGTAGQERRQ 195
           QPPQ+ + F+DLI AM    R   L   S+ EP     S+ + S+     F T  Q  R 
Sbjct: 279 QPPQSSSTFSDLICAMGRSKRSTTLPSSSTAEPTLRLSSSLYLSNSASSLFPTPDQNHRH 338

Query: 196 YAPPPQPAMSATALLQKAAQIGAAATNASLLRGFGI 231
           YAP PQPAMSATALLQKAAQ+GAAA+NASLLRG G+
Sbjct: 339 YAPSPQPAMSATALLQKAAQMGAAASNASLLRGLGL 374