Jatropha Genome Database

JcCB0892281.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0892281.10 - phase: 0 /pseudo/partial
         (80 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01036686001 assembled CDS                                       105   5e-24

>GSVIVT01036686001 assembled CDS
          Length = 535

 Score =  105 bits (261), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 47/60 (78%), Positives = 52/60 (86%)

Query: 4   SCKYGATCRYNHPDRNAINPPAAAISHPIVANPAANLNIGVINPAASLYQTIDPRLAQPM 63
           SCKYGATCRYNHPDRNAINPPAAAI H IVA+PAANLN+GV+NP  S+   IDPRL+Q M
Sbjct: 352 SCKYGATCRYNHPDRNAINPPAAAIGHAIVASPAANLNVGVVNPVTSILHPIDPRLSQTM 411