Jatropha Genome Database
- JcCB0890051.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0890051.10 - phase: 0 /partial
(206 letters)
Database: grape_pep_20100319
26,346 sequences; 9,959,944 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
GSVIVT01008860001 assembled CDS 368 e-102
GSVIVT01014790001 assembled CDS 182 1e-46
GSVIVT01011076001 assembled CDS 58 3e-09
GSVIVT01000126001 assembled CDS 57 5e-09
GSVIVT01016478001 assembled CDS 57 8e-09
GSVIVT01032719001 assembled CDS 57 9e-09
GSVIVT01017872001 assembled CDS 55 3e-08
GSVIVT01037518001 assembled CDS 53 9e-08
GSVIVT01008796001 assembled CDS 52 2e-07
GSVIVT01017925001 assembled CDS 50 8e-07
GSVIVT01011129001 assembled CDS 48 3e-06
>GSVIVT01008860001 assembled CDS
Length = 326
Score = 368 bits (944), Expect = e-102, Method: Compositional matrix adjust.
Identities = 175/201 (87%), Positives = 188/201 (93%)
Query: 6 LSLSKTQGGEASSIWPSDGMMQSVSTQSTLRCLSRMLDEAIHADVTIHTADGTLRAHKAM 65
L + GGEASSIWPSDG+MQS++ QSTLRCLSRML+EAIHADVTI+TADGTLRAHKA+
Sbjct: 119 LKICPLNGGEASSIWPSDGVMQSLAAQSTLRCLSRMLNEAIHADVTINTADGTLRAHKAI 178
Query: 66 LSASSPVFQSMFHHDLKEKESSTIYIEDMSMESCMSLLSYLYGTIKQEDFWKHRLALLGA 125
LSASSPVFQSMF H+LKEK SSTI IED+S+ESCM+LLSYLYG IKQEDFWKHRLALLGA
Sbjct: 179 LSASSPVFQSMFLHNLKEKSSSTIDIEDLSLESCMALLSYLYGNIKQEDFWKHRLALLGA 238
Query: 126 ANKYDIVDLKNACEESLLEDINSGNVLERLQEAWLYQLNKLKRGCLTYLFDFGKIYDVRE 185
ANKYDI DLK+ACEESLLEDINSGNVLERLQEAWLYQLNKLK+GCL YL DFGKIYDVRE
Sbjct: 239 ANKYDITDLKDACEESLLEDINSGNVLERLQEAWLYQLNKLKKGCLMYLLDFGKIYDVRE 298
Query: 186 EMNNFFRQADRELMLEMFQEV 206
EMNNFFRQADRELMLEMFQEV
Sbjct: 299 EMNNFFRQADRELMLEMFQEV 319
>GSVIVT01014790001 assembled CDS
Length = 283
Score = 182 bits (461), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 89/158 (56%), Positives = 115/158 (72%), Gaps = 1/158 (0%)
Query: 6 LSLSKTQGGEASSIWPSDGMMQSVSTQSTLRCLSRMLDEAIHADVTIHTADGTLRAHKAM 65
L S GGE SIW ++G Q S+ + L L RML E IH D+ I+ +DG++ AH+A+
Sbjct: 122 LKTSSPNGGEPCSIW-AEGFAQKRSSTTALASLGRMLSENIHTDIIINASDGSIGAHRAV 180
Query: 66 LSASSPVFQSMFHHDLKEKESSTIYIEDMSMESCMSLLSYLYGTIKQEDFWKHRLALLGA 125
L++ SPVF+SMF HDLKEKE ST+ I DMS+E+C + L+Y+YG I+ ++F HRL LL A
Sbjct: 181 LASISPVFRSMFSHDLKEKELSTVNISDMSIEACQAFLNYIYGNIQHDEFLIHRLPLLRA 240
Query: 126 ANKYDIVDLKNACEESLLEDINSGNVLERLQEAWLYQL 163
A+KYDI DLK AC ESLLEDI++ NVLERLQ A LYQ
Sbjct: 241 ADKYDIEDLKEACHESLLEDIDTKNVLERLQNASLYQF 278
>GSVIVT01011076001 assembled CDS
Length = 402
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 68/148 (45%), Gaps = 11/148 (7%)
Query: 38 LSRMLDEAIHADVTIHTADGTLRAHKAMLSASSPVFQSMFHHDLKEKESSTIYIEDMSME 97
++L+ DV T AHK +L+A SPVF++ +K++ + I +EDM
Sbjct: 189 FGQLLESGKGTDVNFEVDGETFSAHKLVLAARSPVFRAQLFGPMKDQNTQCIKVEDMEAP 248
Query: 98 SCMSLLSYLY--GTIKQEDF------WKHRLA---LLGAANKYDIVDLKNACEESLLEDI 146
+LL ++Y E+ W L LL AA++Y + L+ CE +L ED+
Sbjct: 249 VFKALLHFIYWDSLPDMEELTGLNSKWASTLMAQHLLAAADRYGLDRLRLLCESNLCEDV 308
Query: 147 NSGNVLERLQEAWLYQLNKLKRGCLTYL 174
V L A + +LK CL ++
Sbjct: 309 AINTVATTLALAEQHHCFQLKAVCLKFV 336
>GSVIVT01000126001 assembled CDS
Length = 371
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 66/134 (49%), Gaps = 3/134 (2%)
Query: 40 RMLDEAIHADVTIHTADG-TLRAHKAMLSASSPVFQSMFHHDLKEKESSTIYIEDMSMES 98
R+ DEA ADVTI+T +G L AH ++L SSPV + M +I I + +++
Sbjct: 57 RLFDEACGADVTINTDNGGILYAHASILGMSSPVMKGMLKQTRGRGRWQSISIRGVPLDA 116
Query: 99 CMSLLSYLYGTI-KQEDFWKHRLALLGAANKYDIVDLKNACEESLLED-INSGNVLERLQ 156
+ +LY + +QED + + LL ++ + I LK CE L + NV++ Q
Sbjct: 117 VRVFIRFLYSSCYEQEDMDEFAVPLLVLSHVFVIPHLKRVCEHHLEHGLLTIDNVIDVFQ 176
Query: 157 EAWLYQLNKLKRGC 170
A L +L C
Sbjct: 177 LALLCDAPRLTLIC 190
>GSVIVT01016478001 assembled CDS
Length = 335
Score = 56.6 bits (135), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 69/150 (46%), Gaps = 17/150 (11%)
Query: 38 LSRMLDEAIHADVTIHTADGTLRAHKAMLSASSPVFQSMFHHDLKEKESSTIYIEDMSME 97
L +L+ + D+T AD T +AHK +L+A SPVF++ F + + +ED+
Sbjct: 111 LKDLLESEVGCDITFQVADETFKAHKLILAARSPVFRAQFFGLVGNPNMDKVVVEDVEPS 170
Query: 98 SCMSLLSYLY--------------GTIKQEDFWKHRLALLGAANKYDIVDLKNACEESLL 143
++L ++Y +H LL AA+++ + LK CE L
Sbjct: 171 IFKAMLLFIYSDKLPDVDEITGSASVCTSTIMVQH---LLAAADRFGLDRLKLLCESKLC 227
Query: 144 EDINSGNVLERLQEAWLYQLNKLKRGCLTY 173
+++++ V L A ++ +LK CL +
Sbjct: 228 KEVSAETVATTLALAEQHRCPQLKAICLKF 257
>GSVIVT01032719001 assembled CDS
Length = 281
Score = 56.6 bits (135), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 59/101 (58%), Gaps = 4/101 (3%)
Query: 46 IHADVTIHTADG--TLRAHKAMLSASSPVFQSMFHHD-LKEKESSTIYIEDMSMESCMSL 102
IH D+ + +L AH+A+L+A S +F++M D K S+TI + +++ E SL
Sbjct: 107 IHTDIEVKPGHNGPSLFAHRALLAARSEIFKNMLDSDGCKAAPSNTITLPELNHEELDSL 166
Query: 103 LSYLY-GTIKQEDFWKHRLALLGAANKYDIVDLKNACEESL 142
L +LY G++ + KH +L AA+KY+I L+ CE+ +
Sbjct: 167 LEFLYSGSLPADKVEKHVYSLSLAADKYEIPFLQKFCEQRM 207
>GSVIVT01017872001 assembled CDS
Length = 408
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 64/148 (43%), Gaps = 11/148 (7%)
Query: 38 LSRMLDEAIHADVTIHTADGTLRAHKAMLSASSPVFQSMFHHDLKEKESSTIYIEDMSME 97
++L+ DV AHK +L+A SPVF++ +K+ + I IEDM
Sbjct: 193 FGQLLESGKGTDVNFEVDGEIFSAHKLVLAARSPVFRAQLFGPMKDCNTQLIKIEDMEAP 252
Query: 98 SCMSLLSYLY--------GTIKQEDFWKHRLA---LLGAANKYDIVDLKNACEESLLEDI 146
+LL + Y + W + LL AA++Y + L+ CE+ L ED+
Sbjct: 253 VFKALLHFTYWDALPDMQELVGMNSKWASTMMAQHLLAAADRYGLDRLRLLCEDKLCEDV 312
Query: 147 NSGNVLERLQEAWLYQLNKLKRGCLTYL 174
V L A + +LK CL ++
Sbjct: 313 AINTVATTLALAEQHHCFQLKAVCLKFV 340
>GSVIVT01037518001 assembled CDS
Length = 405
Score = 53.1 bits (126), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 65/140 (46%), Gaps = 15/140 (10%)
Query: 48 ADVTIHTADGTLRAHKAMLSASSPVFQSMFHHDLKEKESSTIYIEDMSMESCMSLLSYLY 107
+DV A AHK +L+A SPVF++ F D E+++ + I D+ + ++L ++Y
Sbjct: 187 SDVVFDVAGEKFHAHKLVLAARSPVFRNEFF-DRLEEDTQEVVITDLEPKVFKAMLHFIY 245
Query: 108 GTIKQEDFWKHRLA--------------LLGAANKYDIVDLKNACEESLLEDINSGNVLE 153
ED + LL AA+KY + L+ CE + +DI+ V +
Sbjct: 246 RDALIEDVEMVASSSTCASSESDTLMEKLLAAADKYGLARLRRMCESHICKDISVHTVAK 305
Query: 154 RLQEAWLYQLNKLKRGCLTY 173
L A Y +LK CL +
Sbjct: 306 TLALADRYHATELKAVCLRF 325
>GSVIVT01008796001 assembled CDS
Length = 241
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 72/145 (49%), Gaps = 6/145 (4%)
Query: 62 HKAMLSASSPVFQSMFHHDLKEKESSTIYIEDMSMESCMSLLSYLYGTIKQEDFWKHRLA 121
HK++L++ SPVF++M ++++E S TI I D+S E+ ++YLY E +A
Sbjct: 82 HKSVLASRSPVFKAMLENEMEESLSGTIKISDVSYEALRCFVNYLYTA---EACLDEPMA 138
Query: 122 --LLGAANKYDIVDLKNACEESLLEDINSGNVLERLQEAWLYQLNKLKRGCLTYLFDFGK 179
LL A KY + LK CE+ ++ +N N + A + L L+ + D
Sbjct: 139 CDLLVLAEKYQVKHLKAYCEKFMVSKLNWDNSVISFAFAHQHNAKLLIDAALSVITDNMD 198
Query: 180 IYDVREEMNNFFRQADRELMLEMFQ 204
REE + D L++E+++
Sbjct: 199 KLTKREEYIELVEK-DPRLVVEIYE 222
>GSVIVT01017925001 assembled CDS
Length = 705
Score = 50.1 bits (118), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 84/169 (49%), Gaps = 8/169 (4%)
Query: 15 EASSIWPSDGMMQSVSTQSTLRCLSRMLDEAIHADVTIHTADGTLRAHKAMLSASSPVFQ 74
+A ++ P D S + Q L + ++ A +DVT AH+ L ASS F+
Sbjct: 507 KAMTLSPVDAAPPSPTPQVYLG--EQYVNSATLSDVTFLVGGKRFYAHRICLLASSDAFR 564
Query: 75 SMFHHDLKEKESSTIYIEDMSMESCMSLLSYLY-GTIKQE-DFWKHRLALLGAANKYDIV 132
+MF +EK++ I I ++ E ++ ++Y G+++ D + LL AA++Y +
Sbjct: 565 AMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVEITLDIAQD---LLRAADQYLLE 621
Query: 133 DLKNACEESLLEDINSGNVLERLQEAWLYQLNKLKRGCLTYLFD-FGKI 180
LK CE ++ +DI+ NV + + + L+ C+ ++ + F K+
Sbjct: 622 GLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILFILEQFSKL 670
>GSVIVT01011129001 assembled CDS
Length = 713
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 73/147 (49%), Gaps = 16/147 (10%)
Query: 61 AHKAMLSASSPVFQSMFHHDLKEKESSTIYIEDMSMESCMSLLSYLY-GTIKQE-DFWKH 118
AH+ L ASS F++MF +EK++ I I ++ + ++ Y+Y G++ D +
Sbjct: 557 AHRICLLASSDAFRAMFDGGYREKDAQDIEIPNIRWDVFELMMRYIYTGSVDVNLDIAQD 616
Query: 119 RLALLGAANKYDIVDLKNACEESLLEDINSGNVLERLQEAWLYQLNKLKRGCLTYLFD-F 177
LL AA++Y + LK CE ++ +DI+ NV + + + L+ C+ Y+ + F
Sbjct: 617 ---LLRAADQYLLEGLKRLCEYAIAQDISVENVSLMYELSEAFNAMTLRHTCILYILEHF 673
Query: 178 GK----------IYDVREEMNNFFRQA 194
K I + E+ FFR+A
Sbjct: 674 EKLTVKPWYSRLIQCILPEIRKFFREA 700