Jatropha Genome Database

JcCB0860891.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0860891.10 - phase: 0 /partial
         (78 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01008933001 assembled CDS                                        48   9e-07

>GSVIVT01008933001 assembled CDS
          Length = 167

 Score = 48.1 bits (113), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 1/69 (1%)

Query: 3   ENIKIKEFSKYQIDQIEQMIGQDHVVHWELKRGERADIEGLISISCYRGIRHQDGLPLRG 62
           EN   K+ S+ ++  +   + + +++  +L+R     I  L  I CYRGIRH  GLP RG
Sbjct: 85  ENKITKDLSEEELITLRDEVSK-YMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRG 143

Query: 63  QQTHTNART 71
           Q+T  N RT
Sbjct: 144 QRTKNNCRT 152