Jatropha Genome Database

JcCB0843131.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0843131.10 - phase: 0 /partial
         (230 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01015147001 assembled CDS                                       214   2e-56

>GSVIVT01015147001 assembled CDS
          Length = 323

 Score =  214 bits (545), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 98/106 (92%), Positives = 104/106 (98%)

Query: 1   KISMAQLVQPIANGAFVLSVDTDFDGCMQLIREITAELPIYLANSLNSLRLEGQKTAAIE 60
           +IS+AQLVQPIANGAFVLS+DTDFDGCM+LIRE+T+ELPIYLANSLNSLRLEGQKTAAIE
Sbjct: 174 RISIAQLVQPIANGAFVLSIDTDFDGCMKLIREVTSELPIYLANSLNSLRLEGQKTAAIE 233

Query: 61  ILQQFDWEVPDWVIVPGGNLGNIYAFYKGFYMCKELGLVDRIPRLV 106
           ILQQFDWEVPDWVIVPGGNLGNIYAFYKGF MC ELGLVDRIPRLV
Sbjct: 234 ILQQFDWEVPDWVIVPGGNLGNIYAFYKGFKMCHELGLVDRIPRLV 279