Jatropha Genome Database

JcCB0836821.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0836821.10 + phase: 0 
         (115 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01033524001 assembled CDS                                       165   4e-42

>GSVIVT01033524001 assembled CDS
          Length = 189

 Score =  165 bits (417), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 78/113 (69%), Positives = 91/113 (80%)

Query: 1   MDPSEIRYLEDDDTPIKKTIKGATMGLVAGTIWGTVVATWYDVPRVEKHVALPGLIRTVK 60
           MDPSE+RYLED+DT   K IKGAT GLV GTIWGT+VA+W+DVPRVEKHVALPGLIRT+K
Sbjct: 32  MDPSELRYLEDEDTSTMKVIKGATSGLVIGTIWGTIVASWHDVPRVEKHVALPGLIRTLK 91

Query: 61  MMGNYGATFAAIGGVYIGVEQLVQHYRMKRDXXXXXXXXXXXXXSILGFKGEE 113
           MMG+YG TFAAIGGVY+GVEQL+++YRMKRD             +ILG+KG  
Sbjct: 92  MMGSYGMTFAAIGGVYMGVEQLLENYRMKRDLYNGAVGGFVAGATILGYKGRS 144