Jatropha Genome Database

JcCB0832141.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0832141.10 + phase: 0 /partial
         (137 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01035113001 assembled CDS                                       206   3e-54
GSVIVT01031167001 assembled CDS                                       187   1e-48
GSVIVT01018184001 assembled CDS                                       177   2e-45
GSVIVT01018861001 assembled CDS                                       162   4e-41
GSVIVT01006452001 assembled CDS                                       127   2e-30
GSVIVT01006450001 assembled CDS                                       117   2e-27
GSVIVT01030380001 assembled CDS                                       109   4e-25
GSVIVT01030378001 assembled CDS                                       106   4e-24
GSVIVT01030377001 assembled CDS                                       104   1e-23

>GSVIVT01035113001 assembled CDS
          Length = 317

 Score =  206 bits (523), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 99/133 (74%), Positives = 112/133 (84%), Gaps = 4/133 (3%)

Query: 1   MDAIEHRFVQVNGINIHVAEAGPVNGPVILFIHGFPELWYSWRHQIVALASLGYRAVAPD 60
           M+ +EHR V+ NGINIHVAE G   GP+ILFIHGFPE WYSWRHQI ALA LGYRAVAPD
Sbjct: 1   MEGVEHRTVKANGINIHVAEKG--EGPIILFIHGFPESWYSWRHQIHALALLGYRAVAPD 58

Query: 61  MRGYGDTDAPDDLQSYTCFHIVGDLIGLLDAVAPQQEKVFVVGHDWGAYIAWHLCLFRPD 120
           +RGYGD+DAP D+ SYTC H+VGDLIG+LDA+    +KVFVVGHDWGA IAW+LCLFRPD
Sbjct: 59  LRGYGDSDAPSDVGSYTCLHVVGDLIGVLDAMG--ADKVFVVGHDWGAIIAWYLCLFRPD 116

Query: 121 RVKALVNLSVVLL 133
           RVKALVN+SV   
Sbjct: 117 RVKALVNMSVAYF 129


>GSVIVT01031167001 assembled CDS
          Length = 294

 Score =  187 bits (476), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 86/130 (66%), Positives = 105/130 (80%), Gaps = 4/130 (3%)

Query: 1   MDAIEHRFVQVNGINIHVAEAGPVNGPVILFIHGFPELWYSWRHQIVALASLGYRAVAPD 60
           M+ IEHR V VNGI +HVAE G   GPV+LF+HGFPELWY+WRHQI+A+AS GY AVAPD
Sbjct: 1   MEGIEHRMVSVNGIKMHVAEKG--QGPVVLFLHGFPELWYTWRHQIIAMASHGYHAVAPD 58

Query: 61  MRGYGDTDAPDDLQSYTCFHIVGDLIGLLDAVAPQQEKVFVVGHDWGAYIAWHLCLFRPD 120
           +RGY D++AP    SYTC H+VGDLI L+D +    +KVF+VGHDWGA I W++CLFRPD
Sbjct: 59  LRGYSDSEAPASFTSYTCLHVVGDLIALIDCLG--ADKVFLVGHDWGAQIGWYMCLFRPD 116

Query: 121 RVKALVNLSV 130
           RVKA V+L+V
Sbjct: 117 RVKAYVSLTV 126


>GSVIVT01018184001 assembled CDS
          Length = 317

 Score =  177 bits (448), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 86/129 (66%), Positives = 98/129 (75%), Gaps = 4/129 (3%)

Query: 2   DAIEHRFVQVNGINIHVAEAGPVNGPVILFIHGFPELWYSWRHQIVALASLGYRAVAPDM 61
           + I HR +  NGI +HVAE G   GP++L IHGFPELW SW +QI  LA  GYR VAPDM
Sbjct: 4   EGIIHRRISTNGIWMHVAELG--KGPLVLLIHGFPELWSSWNYQITHLAKHGYRVVAPDM 61

Query: 62  RGYGDTDAPDDLQSYTCFHIVGDLIGLLDAVAPQQEKVFVVGHDWGAYIAWHLCLFRPDR 121
           RGYGD+D+P D  SYT  H+VGDLIGLLD +   +EK FVVGHDWGA +AWHLCL RPDR
Sbjct: 62  RGYGDSDSPPDPASYTILHLVGDLIGLLDQLG--EEKAFVVGHDWGAEVAWHLCLLRPDR 119

Query: 122 VKALVNLSV 130
           VKALVNL V
Sbjct: 120 VKALVNLGV 128


>GSVIVT01018861001 assembled CDS
          Length = 318

 Score =  162 bits (410), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 78/129 (60%), Positives = 95/129 (73%), Gaps = 4/129 (3%)

Query: 2   DAIEHRFVQVNGINIHVAEAGPVNGPVILFIHGFPELWYSWRHQIVALASLGYRAVAPDM 61
           D + H+ +++NGI +H+AE G   GP++L +HGFP+ WYSWRHQ+  LA+ GY  VAPDM
Sbjct: 3   DQVRHQRIKINGIWMHIAEQG--TGPLVLLLHGFPQFWYSWRHQMGCLANKGYHVVAPDM 60

Query: 62  RGYGDTDAPDDLQSYTCFHIVGDLIGLLDAVAPQQEKVFVVGHDWGAYIAWHLCLFRPDR 121
           RGYGDTD+P    SYT FH+VGD+IGL+D    Q  KV VVG DWGA  AWHL LFRPDR
Sbjct: 61  RGYGDTDSPVSPTSYTVFHLVGDIIGLIDHFGEQ--KVVVVGADWGAVAAWHLSLFRPDR 118

Query: 122 VKALVNLSV 130
           VK LV L V
Sbjct: 119 VKGLVCLCV 127


>GSVIVT01006452001 assembled CDS
          Length = 310

 Score =  127 bits (319), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 59/129 (45%), Positives = 92/129 (71%), Gaps = 5/129 (3%)

Query: 1   MDAIEHRFVQVNGINIHVAEAGPVNGPV-ILFIHGFPELWYSWRHQIVALASLGYRAVAP 59
           MD I+H F+ VNG+ +HVAE G  +GP  ++F+HGFPE+WYSWRHQ++A+A  G+RA+AP
Sbjct: 1   MDQIQHNFIDVNGLKLHVAEIG--SGPTTVVFLHGFPEIWYSWRHQMIAVAKAGFRAIAP 58

Query: 60  DMRGYGDTDAPDDLQSYTCFHIVGDLIGLLDAVAPQQEKVFVVGHDWGAYIAWHLCLFRP 119
           D RGYG +++P + +  +   ++ DL+G+LD +    +KVF+V  D+G   A+ L +F P
Sbjct: 59  DHRGYGLSESPPEPEKASFSDLLADLVGILDFLG--IDKVFLVAKDFGGRPAYLLTVFHP 116

Query: 120 DRVKALVNL 128
           +RV  +V +
Sbjct: 117 ERVLGVVTV 125


>GSVIVT01006450001 assembled CDS
          Length = 311

 Score =  117 bits (293), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 55/131 (41%), Positives = 87/131 (66%), Gaps = 5/131 (3%)

Query: 1   MDAIEHRFVQVNGINIHVAEAGPVNGPV-ILFIHGFPELWYSWRHQIVALASLGYRAVAP 59
           MD I H F+ VNG+ +HVAE G  +GP  ++F+HGFPE+WYSWRHQ++A+A  G+RA+ P
Sbjct: 1   MDQIRHNFIHVNGLKLHVAEIG--SGPTTVVFLHGFPEIWYSWRHQMIAVAKSGFRAIVP 58

Query: 60  DMRGYGDTDAPDDLQSYTCFHIVGDLIGLLDAVAPQQEKVFVVGHDWGAYIAWHLCLFRP 119
           D RGYG ++ P + +  +   ++ DL+G+L  +    +KVF++  D+G   A+   +F P
Sbjct: 59  DYRGYGLSEPPPEPEKASFSDVIADLVGVLGFLG--IDKVFLIAKDFGVRPAYLFTVFHP 116

Query: 120 DRVKALVNLSV 130
           + V  +V + V
Sbjct: 117 EWVLGVVTVGV 127


>GSVIVT01030380001 assembled CDS
          Length = 313

 Score =  109 bits (272), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 60/134 (44%), Positives = 93/134 (69%), Gaps = 5/134 (3%)

Query: 1   MDAIEHRFVQVNGINIHVAEAGPVNGP-VILFIHGFPELWYSWRHQIVALASLGYRAVAP 59
           M+ I+H++V+V+G+ +HVAE G   GP V+LF+HGFPE+WYSWRHQ++A A+ GYRA+A 
Sbjct: 1   MEQIQHKYVEVSGLKLHVAELG--TGPKVVLFLHGFPEIWYSWRHQMIAAAAAGYRAIAF 58

Query: 60  DMRGYGDTDAPDDLQSYTCFHIVGDLIGLLDAVAPQQEKVFVVGHDWGAYIAWHLCLFRP 119
           D RGYG +  P + +  +   +V D+IG++D+      K F+VG D GA+ A+H+ +  P
Sbjct: 59  DFRGYGLSQQPPEPEKASFDDLVVDVIGIMDSFG--ISKAFLVGKDSGAFPAFHVAVLHP 116

Query: 120 DRVKALVNLSVVLL 133
           +RV  +V L +  +
Sbjct: 117 ERVSGVVTLGIPFM 130


>GSVIVT01030378001 assembled CDS
          Length = 313

 Score =  106 bits (264), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 59/131 (45%), Positives = 91/131 (69%), Gaps = 5/131 (3%)

Query: 1   MDAIEHRFVQVNGINIHVAEAGPVNGP-VILFIHGFPELWYSWRHQIVALASLGYRAVAP 59
           M+ I+H++V+V+G+ +HVAE G   GP V+LF+HGFPE+WYSWRHQ+VA A+ GYRA+A 
Sbjct: 1   MEQIQHKYVEVSGLKLHVAELG--TGPKVVLFLHGFPEIWYSWRHQMVAAAAAGYRAIAF 58

Query: 60  DMRGYGDTDAPDDLQSYTCFHIVGDLIGLLDAVAPQQEKVFVVGHDWGAYIAWHLCLFRP 119
           D RGYG +  P + +  +   +V D+IG++D +     K F+VG D+GA   +H+ +  P
Sbjct: 59  DFRGYGLSQQPPEPEKASFDDLVVDVIGVMDGLG--ISKAFLVGKDFGAGPVFHVAVLHP 116

Query: 120 DRVKALVNLSV 130
           +RV  ++ L +
Sbjct: 117 ERVSGVITLGI 127


>GSVIVT01030377001 assembled CDS
          Length = 313

 Score =  104 bits (259), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 59/131 (45%), Positives = 89/131 (67%), Gaps = 5/131 (3%)

Query: 1   MDAIEHRFVQVNGINIHVAEAGPVNGP-VILFIHGFPELWYSWRHQIVALASLGYRAVAP 59
           M+ I+H+ V+V G+ +HVAE G   GP  +LF+HGFPE+WYSWRHQ+VA A+ GYRA+A 
Sbjct: 1   MEQIQHKHVEVGGLKLHVAETG--TGPKAVLFLHGFPEIWYSWRHQMVAAAAAGYRAIAF 58

Query: 60  DMRGYGDTDAPDDLQSYTCFHIVGDLIGLLDAVAPQQEKVFVVGHDWGAYIAWHLCLFRP 119
           D RGYG +  P + +  +   +V D+IG++D +     K F+VG D+GA  A+H+ +  P
Sbjct: 59  DFRGYGLSQHPPEPEKASFGDLVVDVIGVMDCLG--INKAFLVGKDFGAMPAFHVAVVHP 116

Query: 120 DRVKALVNLSV 130
           +RV  ++ L +
Sbjct: 117 ERVSGVITLGI 127