Jatropha Genome Database

JcCB0832121.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0832121.10 - phase: 0 /pseudo
         (125 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01015663001 assembled CDS                                       101   1e-22

>GSVIVT01015663001 assembled CDS
          Length = 413

 Score =  101 bits (251), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 44/71 (61%), Positives = 56/71 (78%)

Query: 11 NDIFEDNHISNDGSICGYDSLHHLLCANLKPHLFKEVSRLLLGMNCGKAIETLVLPDSAK 70
          N   E+   S DGSICG+ SLHHLL A+L+PHL++EVSRLLLG+NCGK +E + LP+SAK
Sbjct: 8  NGKLEETQPSTDGSICGFQSLHHLLKASLQPHLYQEVSRLLLGLNCGKPLENIALPESAK 67

Query: 71 VISSKHDFDLQ 81
           +S +H FDLQ
Sbjct: 68 ALSLEHGFDLQ 78