Jatropha Genome Database

JcCB0829751.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0829751.10 - phase: 2 /pseudo/partial
         (167 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01027958001 assembled CDS                                       166   5e-42
GSVIVT01010939001 assembled CDS                                       108   2e-24
GSVIVT01020832001 assembled CDS                                        96   8e-21
GSVIVT01020831001 assembled CDS                                        94   3e-20
GSVIVT01010942001 assembled CDS                                        91   4e-19
GSVIVT01010940001 assembled CDS                                        89   1e-18
GSVIVT01035256001 assembled CDS                                        74   3e-14
GSVIVT01008725001 assembled CDS                                        72   1e-13
GSVIVT01035262001 assembled CDS                                        66   7e-12
GSVIVT01027961001 assembled CDS                                        56   9e-09

>GSVIVT01027958001 assembled CDS
          Length = 214

 Score =  166 bits (420), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 84/148 (56%), Positives = 98/148 (66%), Gaps = 1/148 (0%)

Query: 19  ESRGQFPQYITHENPDKGTQLLCPGKVKMPILTVWMEVEAQKFEPAASKLNWEVFLKPIF 78
           ESR    QYI HE    GTQL+CP   KM I++VWMEVEA +++P A+KL +E+ +KP+ 
Sbjct: 67  ESRA-ITQYIAHEYASNGTQLICPDSKKMAIMSVWMEVEAHQYDPHAAKLCFELCIKPML 125

Query: 79  GLTTDSAAVEANEAELSKVLDVYEARLAQSKYLACDCFTXXXXXXXXXXXXXXXXXXXXX 138
           GLTTD AAVE  EA+L KVLDVYEARL QSKYL  DC                       
Sbjct: 126 GLTTDPAAVEDLEAKLGKVLDVYEARLTQSKYLGGDCLGLADLHHLPTLHYLLGSSAKKL 185

Query: 139 IESRPHVSAWAADITARPAWAKVLAMQK 166
            +SRPHVSAW ADITARPAWAKV+AMQK
Sbjct: 186 FDSRPHVSAWVADITARPAWAKVIAMQK 213


>GSVIVT01010939001 assembled CDS
          Length = 425

 Score =  108 bits (269), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 65/150 (43%), Positives = 82/150 (54%), Gaps = 1/150 (0%)

Query: 15  YGHAESRGQFPQYITHENPDKGTQLLCPGKVKMPILTVWMEVEAQKFEPAASKLNWEVFL 74
           Y   ESR    + + H+   KG +L+     K  +++ W++VE  KFEP A +L  E+  
Sbjct: 63  YTQFESRA-IVRSMGHQYGKKGEELVFWNSQKQAVVSNWIDVEDHKFEPPALELISELLT 121

Query: 75  KPIFGLTTDSAAVEANEAELSKVLDVYEARLAQSKYLACDCFTXXXXXXXXXXXXXXXXX 134
           KP  GL  D A V   EA+L+KVLDVYEARLA+ KYLA D +T                 
Sbjct: 122 KPGNGLAPDLAVVAKAEAQLAKVLDVYEARLAEFKYLAADNYTIADVLHLPNLQALMETP 181

Query: 135 XXXXIESRPHVSAWAADITARPAWAKVLAM 164
               IESR  VSAW +DI ARPAWAKV  M
Sbjct: 182 AKKLIESRARVSAWCSDILARPAWAKVAVM 211



 Score =  101 bits (251), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 54/142 (38%), Positives = 72/142 (50%)

Query: 26  QYITHENPDKGTQLLCPGKVKMPILTVWMEVEAQKFEPAASKLNWEVFLKPIFGLTTDSA 85
           +YI+HE   +G + +        I   W++VE  +F+P ASKL WE+  KP  GL TD  
Sbjct: 281 RYISHEYGKRGEEQVYEIPKLQGIAAAWIDVEDHQFDPPASKLIWELVFKPQKGLPTDEG 340

Query: 86  AVEANEAELSKVLDVYEARLAQSKYLACDCFTXXXXXXXXXXXXXXXXXXXXXIESRPHV 145
            VE  EA+L KVLDVYE RL+ S +L  D FT                      E RP V
Sbjct: 341 VVEEEEAKLVKVLDVYEERLSNSVFLGGDKFTSADLTHIPSLYLLMKTPVKRLFEERPRV 400

Query: 146 SAWAADITARPAWAKVLAMQKK 167
            AW   + +RP W K++ M +K
Sbjct: 401 RAWYRGVMSRPGWEKMVEMVEK 422


>GSVIVT01020832001 assembled CDS
          Length = 215

 Score = 95.9 bits (237), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 54/151 (35%), Positives = 76/151 (50%), Gaps = 1/151 (0%)

Query: 13  NDYGHAESRGQFPQYITHENPDKGTQLLCPGKVKMPILTVWMEVEAQKFEPAASKLNWEV 72
            DY   ESR    +Y   +   +GT LL     +  ++  W+EVEAQ + PA   L  E+
Sbjct: 59  GDYTLFESRA-IMRYYAEKYKSQGTDLLGKTIEERGVVEQWLEVEAQSYHPAIDNLVIEI 117

Query: 73  FLKPIFGLTTDSAAVEANEAELSKVLDVYEARLAQSKYLACDCFTXXXXXXXXXXXXXXX 132
                 G+  D+  +E +E +L+KVLD+YE RL++SKYLA D F+               
Sbjct: 118 LFGRKRGIPPDAKVIEESEKKLAKVLDIYEERLSKSKYLAGDFFSLADLSHLPFTKYLAD 177

Query: 133 XXXXXXIESRPHVSAWAADITARPAWAKVLA 163
                 IE R HV AW  DI+ RP+W KV +
Sbjct: 178 MGKMYLIEERKHVKAWWDDISNRPSWKKVFS 208


>GSVIVT01020831001 assembled CDS
          Length = 216

 Score = 94.0 bits (232), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 54/152 (35%), Positives = 73/152 (48%), Gaps = 1/152 (0%)

Query: 13  NDYGHAESRGQFPQYITHENPDKGTQLLCPGKVKMPILTVWMEVEAQKFEPAASKLNWEV 72
            DY   ESR    +Y   +   +GT LL     +   +  W+EVEAQ + P    L   V
Sbjct: 59  GDYTLYESRAII-RYYAEKYKSQGTDLLGKTIEERGTVEQWLEVEAQNYHPPIYNLVLHV 117

Query: 73  FLKPIFGLTTDSAAVEANEAELSKVLDVYEARLAQSKYLACDCFTXXXXXXXXXXXXXXX 132
                 G   D+  +E +E  L KVLD+YE RL++SKYLA D F+               
Sbjct: 118 LFSDKMGFPADAKVIEESEKNLGKVLDIYEERLSKSKYLAGDFFSLADLSHIPFTNYLGA 177

Query: 133 XXXXXXIESRPHVSAWAADITARPAWAKVLAM 164
                 I+ R HVSAW  DI++RP+W KVL +
Sbjct: 178 MGKMYLIKEREHVSAWWDDISSRPSWKKVLEL 209


>GSVIVT01010942001 assembled CDS
          Length = 217

 Score = 90.5 bits (223), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 52/144 (36%), Positives = 78/144 (54%), Gaps = 2/144 (1%)

Query: 19  ESRGQFPQYITHENPDKGTQLLCPGKVK-MPILTVWMEVEAQKFEPAASKLNWEVFLKPI 77
           ESR     Y+  +  + G  LL    +K   ++ VW+EVE+Q++ PA  ++ ++ F+ P+
Sbjct: 66  ESRA-ITAYLAEKYKETGCDLLRHNDLKEAALVKVWLEVESQQYHPAIYQIVYQFFVLPL 124

Query: 78  FGLTTDSAAVEANEAELSKVLDVYEARLAQSKYLACDCFTXXXXXXXXXXXXXXXXXXXX 137
            G T D A ++ N  +L KVLDVYEARL  +K LA D ++                    
Sbjct: 125 QGKTADQAIIDVNLEKLGKVLDVYEARLGTTKCLAGDFYSLADLHHLSYTYYFMKTPWAS 184

Query: 138 XIESRPHVSAWAADITARPAWAKV 161
            I SRP+V AW  DI++RPA+ KV
Sbjct: 185 LINSRPNVKAWWEDISSRPAFKKV 208


>GSVIVT01010940001 assembled CDS
          Length = 217

 Score = 88.6 bits (218), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 53/150 (35%), Positives = 78/150 (52%), Gaps = 2/150 (1%)

Query: 13  NDYGHAESRGQFPQYITHENPDKGTQLLCPGKVK-MPILTVWMEVEAQKFEPAASKLNWE 71
            D+   ESR     Y+  +  + G  LL    +K   ++ VW+EVE+Q + PA  ++ ++
Sbjct: 60  GDFTLFESRA-ITAYLAEKYKETGCDLLRHNDLKEAALVKVWLEVESQHYYPAIYQIVYQ 118

Query: 72  VFLKPIFGLTTDSAAVEANEAELSKVLDVYEARLAQSKYLACDCFTXXXXXXXXXXXXXX 131
            F  P+ G T D A ++ N  +L KVLDVYEARL  +K LA D ++              
Sbjct: 119 FFALPLQGKTADQAIIDVNLEKLGKVLDVYEARLGTTKCLAGDFYSLADLHHLSYTYYFM 178

Query: 132 XXXXXXXIESRPHVSAWAADITARPAWAKV 161
                  I SRP+V AW  DI++RPA+ KV
Sbjct: 179 KTPWASLINSRPNVKAWWDDISSRPAFKKV 208


>GSVIVT01035256001 assembled CDS
          Length = 213

 Score = 74.3 bits (181), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 49/153 (32%), Positives = 69/153 (45%), Gaps = 2/153 (1%)

Query: 13  NDYGHAESRGQFPQYITHENPDKGTQLLCPGKVKMPILTVWMEVEAQKFEPAASKLNWEV 72
            D+   ESR    +YI  +  ++G  LL     +  ++  W+EVEA  F      L  ++
Sbjct: 60  GDFRLFESRA-IVRYIAAKYAEQGPDLLGKSLEEKAVVDQWLEVEAHNFNELVYTLVMQL 118

Query: 73  FLKPIFGLTTDSAAVEANEAELSKVLDVYEARLAQSKYLACDCFTXXXXXXX-XXXXXXX 131
            + P  G   D A     E +L KV DVYE RL++S+YLA D FT               
Sbjct: 119 VILPRMGERGDLALAHTCEQKLEKVFDVYEQRLSKSRYLAGDSFTLADLSHLPAIRYLVK 178

Query: 132 XXXXXXXIESRPHVSAWAADITARPAWAKVLAM 164
                  +  R  VSAW  DI+ R AW KV+ +
Sbjct: 179 EAGMAHLVTERKSVSAWWEDISNRAAWKKVMEL 211


>GSVIVT01008725001 assembled CDS
          Length = 223

 Score = 72.4 bits (176), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 72/143 (50%), Gaps = 2/143 (1%)

Query: 26  QYITHENPDKGT-QLLCPGKVKMPILTVWMEVEAQKFEPAASKLNWEVFLKPIFGLTTDS 84
           +Y++ +  ++G  +L     ++   +  W+E E Q F P +S L +++   P   L  D 
Sbjct: 74  RYVSEKYANQGNKRLYGTNPLEKASIEQWLEAEGQSFNPPSSALVFQLAFAPRMKLKQDL 133

Query: 85  AAVEANEAELSKVLDVYEARLAQSKYLACDCFTXXXXXXXXXXXXXXXXXXXXXI-ESRP 143
             ++ +E +L+KVLDVYE RL +S++LA D FT                     +   R 
Sbjct: 134 GVIKQSEEKLAKVLDVYEQRLGESRFLAGDEFTLADLSHLPNTQYLVSVTEKGEMFTKRK 193

Query: 144 HVSAWAADITARPAWAKVLAMQK 166
           +V  W ++I+ R +W KV+ +QK
Sbjct: 194 NVGRWWSEISGRDSWKKVVDLQK 216


>GSVIVT01035262001 assembled CDS
          Length = 213

 Score = 66.2 bits (160), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 66/152 (43%), Gaps = 2/152 (1%)

Query: 14  DYGHAESRGQFPQYITHENPDKGTQLLCPGKVKMPILTVWMEVEAQKFEPAASKLNWEVF 73
           D+   +SR    +YI  +  D+G  L+     +  ++  W+EVE     P    +  ++ 
Sbjct: 61  DFRLFDSRA-IIRYIVAKYVDEGPNLVGRNLEERSLVDQWLEVEENNLNPLIFTVVLQLV 119

Query: 74  LKPIFGLTTDSAAVEANEAELSKVLDVYEARLAQSKYLACDCFTXXXXXXX-XXXXXXXX 132
           + P  G   D   V   E +L KV D YE RL++S YL  D FT                
Sbjct: 120 ILPRMGEKGDLTLVRNCEQKLDKVFDAYEQRLSKSSYLGGDSFTLADLSHLPGIRYLVNE 179

Query: 133 XXXXXXIESRPHVSAWAADITARPAWAKVLAM 164
                 I  R +VSAW  +I+  PAW KV+ +
Sbjct: 180 VGIGHLITERKNVSAWWENISNMPAWKKVMNL 211


>GSVIVT01027961001 assembled CDS
          Length = 85

 Score = 55.8 bits (133), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 24/28 (85%), Positives = 26/28 (92%)

Query: 139 IESRPHVSAWAADITARPAWAKVLAMQK 166
            +SRPHVSAW ADITARPAWAKV+AMQK
Sbjct: 57  FDSRPHVSAWVADITARPAWAKVIAMQK 84