Jatropha Genome Database

JcCB0827591.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0827591.10 - phase: 0 
         (112 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01004084001 assembled CDS                                       226   1e-60
GSVIVT01016669001 assembled CDS                                       108   5e-25

>GSVIVT01004084001 assembled CDS
          Length = 481

 Score =  226 bits (576), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 106/112 (94%), Positives = 108/112 (96%)

Query: 1   MTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRLGKVPDVFYCLKLLEATGISTV 60
           MTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAK+ GKV DVFYCLKLLEATGISTV
Sbjct: 370 MTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKKAGKVADVFYCLKLLEATGISTV 429

Query: 61  PGSGFGQKEGVFHLRTTILPAEEEMPAIMSSFKKFNDEFMEQYEDHTGYSRM 112
           PGSGFGQKEGVFHLRTTILPAEE+MPAIM SFKKFNDEFMEQYEDH GYSRM
Sbjct: 430 PGSGFGQKEGVFHLRTTILPAEEDMPAIMESFKKFNDEFMEQYEDHRGYSRM 481


>GSVIVT01016669001 assembled CDS
          Length = 482

 Score =  108 bits (270), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 55/105 (52%), Positives = 70/105 (66%)

Query: 1   MTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRLGKVPDVFYCLKLLEATGISTV 60
           + D  NS   V CN  EGAMY FP+I LP KAI+AA+     PD FY  +LL ATGI  V
Sbjct: 378 LEDALNSLEGVTCNKAEGAMYLFPRIHLPEKAIKAAEAAKTAPDAFYARRLLNATGIVVV 437

Query: 61  PGSGFGQKEGVFHLRTTILPAEEEMPAIMSSFKKFNDEFMEQYED 105
           PGSGFGQ  G +H R TILP E+++PA++S   +F+  FME++ D
Sbjct: 438 PGSGFGQVPGTWHFRCTILPQEDKIPAVVSRLTEFHKGFMEEFRD 482