Jatropha Genome Database

JcCB0815741.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0815741.10 + phase: 1 /TE/partial
         (554 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01028612001 assembled CDS                                       190   1e-48
GSVIVT01014104001 assembled CDS                                       166   3e-41
GSVIVT01034745001 assembled CDS                                       145   6e-35
GSVIVT01024357001 assembled CDS                                       120   2e-27
GSVIVT01017026001 assembled CDS                                       120   2e-27

>GSVIVT01028612001 assembled CDS
          Length = 3048

 Score =  190 bits (483), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 93/190 (48%), Positives = 117/190 (61%)

Query: 364 RYFLTFIDDFSRKTWICLLRTKDQVFKHFQQFHAMVERETGVALKCLRTDNGGEYIFKEF 423
           RY LTF DDFSRKTW+  L  K + F  F+ F   VE+ET   L+CLRTD GGE+  +EF
Sbjct: 533 RYLLTFTDDFSRKTWVYFLVEKSEAFAVFKSFKTYVEKETSSFLRCLRTDRGGEFTSQEF 592

Query: 424 RDYCSQHGIRHEKTVPGTPQHNGVAERINHTIVERVRSMLKMANLPKPFWGEAVNTAVYL 483
             +C  HGIR + T   TPQ NGVAER N TI+  VRSML    LPK FW EAVN  V++
Sbjct: 593 AIFCDVHGIRRQLTAAYTPQQNGVAERKNRTIMNMVRSMLSAKKLPKTFWPEAVNWTVHV 652

Query: 484 INRLPSTALDFDILEKVWTGRNISYSHLRVFGCNAFMHVRKEQRSKFDDKSVPCTFIGYR 543
           +NR P+ A+     E+ W     S  + RVFGC + +HV   +R+K DDKS  C  +G  
Sbjct: 653 LNRSPTFAVQNKTPEEAWGKLKPSVDYFRVFGCLSHVHVPDSKRTKLDDKSFSCVLLGVS 712

Query: 544 DEEFGYRLWD 553
           +E   YRL+D
Sbjct: 713 EESKAYRLYD 722


>GSVIVT01014104001 assembled CDS
          Length = 1354

 Score =  166 bits (419), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 83/200 (41%), Positives = 119/200 (59%), Gaps = 10/200 (5%)

Query: 362  GSRYFLTFIDDFSRKTWICLLRTKDQVFKHFQQFHAMVERETGVALKCLRTDNGGEYIFK 421
            G +YF+TFIDD SR  ++ L+  K Q    F+ F   VER+    +K +R+D GGEY  +
Sbjct: 880  GEKYFITFIDDLSRYGYVYLMHEKSQAIDIFEMFITEVERQLDKKIKIVRSDQGGEYYGR 939

Query: 422  ---------EFRDYCSQHGIRHEKTVPGTPQHNGVAERINHTIVERVRSMLKMANLPKPF 472
                      F  +  +HGIR + T+PGTPQ NGVAER N T++E VRSM+  +++P   
Sbjct: 940  YDESGQNPGPFAKFLEKHGIRAQYTMPGTPQQNGVAERRNRTLMEMVRSMMSYSSVPISL 999

Query: 473  WGEAVNTAVYLINRLPSTALDFDILEKVWTGRNISYSHLRVFGCNAFMHVRKEQRSKFDD 532
            WGEA+ TA+Y++NR+PS A+     E +WTGR  S  H+ ++GC A   +      K D 
Sbjct: 1000 WGEALKTAMYILNRVPSKAVPKTPFE-LWTGRKPSLRHIHIWGCPAEARIYNPHEKKLDS 1058

Query: 533  KSVPCTFIGYRDEEFGYRLW 552
            ++V   FIGY D+  GYR +
Sbjct: 1059 RTVSGYFIGYPDKSKGYRFY 1078


>GSVIVT01034745001 assembled CDS
          Length = 2196

 Score =  145 bits (365), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 68/125 (54%), Positives = 83/125 (66%)

Query: 365 YFLTFIDDFSRKTWICLLRTKDQVFKHFQQFHAMVERETGVALKCLRTDNGGEYIFKEFR 424
           YF  FIDD SR TW+  L+TK QV   F+ F  MVE ++G  +K LRTDNGGEYI KE  
Sbjct: 545 YFALFIDDLSRMTWVYFLKTKSQVLSVFKSFKKMVETQSGQNVKVLRTDNGGEYISKELN 604

Query: 425 DYCSQHGIRHEKTVPGTPQHNGVAERINHTIVERVRSMLKMANLPKPFWGEAVNTAVYLI 484
            +C + GI H+   P +PQ NGV ER N T++E  R ML    LPK  W EAVNT+VYL+
Sbjct: 605 VFCQEAGIVHQLIAPYSPQQNGVFERKNRTVMEMARCMLFEKKLPKLLWAEAVNTSVYLL 664

Query: 485 NRLPS 489
           NRLP+
Sbjct: 665 NRLPT 669


>GSVIVT01024357001 assembled CDS
          Length = 851

 Score =  120 bits (301), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 59/117 (50%), Positives = 76/117 (64%)

Query: 437 TVPGTPQHNGVAERINHTIVERVRSMLKMANLPKPFWGEAVNTAVYLINRLPSTALDFDI 496
           T+  TPQ NGV ER N T++E  ++ML    LPK FW EAVNT VYL+NR P+ AL    
Sbjct: 511 TIAYTPQQNGVVERKNQTVMEMAKAMLYEKGLPKFFWVEAVNTVVYLLNRCPTKALLNKT 570

Query: 497 LEKVWTGRNISYSHLRVFGCNAFMHVRKEQRSKFDDKSVPCTFIGYRDEEFGYRLWD 553
           L + W+GRN S  H +VFGC  +  V KE+RSK D+ S  C F+GY  +  GYRL++
Sbjct: 571 LIEAWSGRNPSVRHFKVFGCLCYSQVPKERRSKLDETSEKCIFMGYSSQSKGYRLYN 627


>GSVIVT01017026001 assembled CDS
          Length = 1273

 Score =  120 bits (301), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 63/190 (33%), Positives = 99/190 (52%)

Query: 360  DGGSRYFLTFIDDFSRKTWICLLRTKDQVFKHFQQFHAMVERETGVALKCLRTDNGGEYI 419
            + G  Y++ FIDD+SR TW+  L+ K   F  F QF   VE +    +K  ++D G E+ 
Sbjct: 1079 NSGFLYYVIFIDDYSRFTWLYPLKFKSDFFDIFLQFKKFVENQHFARIKVFQSDGGAEFT 1138

Query: 420  FKEFRDYCSQHGIRHEKTVPGTPQHNGVAERINHTIVERVRSMLKMANLPKPFWGEAVNT 479
               F+ +    GI H+ + P TP  NG AER +  + E   ++L  ++L   FW +A +T
Sbjct: 1139 NTCFKAHLRTSGIHHQLSCPYTPAQNGRAERKHRHVTETGLTLLFHSHLSPRFWVDAFST 1198

Query: 480  AVYLINRLPSTALDFDILEKVWTGRNISYSHLRVFGCNAFMHVRKEQRSKFDDKSVPCTF 539
            A Y+INRLP+  L      ++  G +  Y +   FGC  +  +R    +K   +S+PC F
Sbjct: 1199 ATYIINRLPTPLLGGKSPFELLYGYSPHYENFHPFGCRVYPCLRDYMPNKLSPRSIPCIF 1258

Query: 540  IGYRDEEFGY 549
            +GY     G+
Sbjct: 1259 LGYSPSHKGF 1268