Jatropha Genome Database

JcCB0813871.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0813871.10 + phase: 0 
         (202 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01016972001 assembled CDS                                       127   4e-30

>GSVIVT01016972001 assembled CDS
          Length = 364

 Score =  127 bits (319), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 84/171 (49%), Positives = 100/171 (58%), Gaps = 33/171 (19%)

Query: 1   MEGGSKNGEACPQLLDLIPREREWLVKRADERST---EEKKLELRLGPPGEEWSLGKTAK 57
           MEG S+  E CPQLLDLI ++REW++K  + RS    EEKKLELRLGPPGE+W++     
Sbjct: 44  MEGCSRKDEVCPQLLDLISKDREWVLKSGEGRSHGSPEEKKLELRLGPPGEDWTIKDNTN 103

Query: 58  NSDDRVRDEFLLSLGNQ--QTHKFSSPENTRAGSVWFNQQLSQQAKAATPFLQFPPKTVT 115
           N++ R RDE L + G +  Q       + T+A                  FLQF      
Sbjct: 104 NNNYRERDESLRNTGEEGYQVKTQQQQQQTKAS-----------------FLQF------ 140

Query: 116 TTQQSLPVTGKESSLPCCTKVVVDLQQSAEKKGFSQPTPANTAVPNSSQKR 166
             Q S PV  KESS PCCTK VVDLQ + EKK FS P  ANTAVPNSSQKR
Sbjct: 141 --QSSPPVITKESSQPCCTK-VVDLQNT-EKKAFS-PASANTAVPNSSQKR 186