Jatropha Genome Database

JcCB0813641.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0813641.10 + phase: 0 /pseudo/partial
         (166 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01034090001 assembled CDS                                       184   1e-47

>GSVIVT01034090001 assembled CDS
          Length = 209

 Score =  184 bits (468), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 94/125 (75%), Positives = 103/125 (82%), Gaps = 1/125 (0%)

Query: 43  LGANYLFCSFAATFSEKVTRTVRKFSPHLAAKMRPPHMPVIRGR-SAKKSVYICGQPRGV 101
           L   +L  SFA TFSEKVTRTVR+FSPHLAAKMRPP  PVIRGR SAK+S+ ICG+PR V
Sbjct: 85  LSIAFLNDSFAGTFSEKVTRTVRQFSPHLAAKMRPPLTPVIRGRPSAKRSILICGRPRWV 144

Query: 102 CVFLFSAASIILWFTSGSLLYVLWAFGIGLLVTIIHASVRTPNLKARLNTFREEFRAVWR 161
            V +FS+ S ILWF S S+L VLWA  IGLL TI+HAS RTPNLKARLNTFREEFRAVWR
Sbjct: 145 FVLIFSSVSFILWFVSCSILTVLWALAIGLLATILHASFRTPNLKARLNTFREEFRAVWR 204

Query: 162 NYSEL 166
           NYSEL
Sbjct: 205 NYSEL 209