Jatropha Genome Database

JcCB0812861.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0812861.10 - phase: 0 /partial
         (104 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01032796001 assembled CDS                                       110   2e-25
GSVIVT01011188001 assembled CDS                                       100   1e-22
GSVIVT01032795001 assembled CDS                                        92   4e-20

>GSVIVT01032796001 assembled CDS
          Length = 128

 Score =  110 bits (274), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 61/91 (67%), Positives = 69/91 (75%), Gaps = 20/91 (21%)

Query: 1   MATEQERAELDARARQGETVVPGGTGGKSLEAQEHLAEGRSRGGQTRREQLGTEGYKELG 60
           MA+++ER++LDA+ARQGETVVPGGTGGKSLEAQEHLAEGRSRGGQTR+EQLGTE      
Sbjct: 34  MASQKERSQLDAKARQGETVVPGGTGGKSLEAQEHLAEGRSRGGQTRKEQLGTE------ 87

Query: 61  HRGGETRREQIGHEGYQEMGRKGGLSTMDKS 91
                         GY EMGRKGGLST D+S
Sbjct: 88  --------------GYHEMGRKGGLSTGDQS 104


>GSVIVT01011188001 assembled CDS
          Length = 113

 Score =  100 bits (250), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 57/91 (62%), Positives = 64/91 (70%), Gaps = 21/91 (23%)

Query: 1  MATEQERAELDARARQGETVVPGGTGGKSLEAQEHLAEGRSRGGQTRREQLGTEGYKELG 60
          MA+ Q R EL  +AR+GETVVPGGTGGKSLEAQEHLAEG                     
Sbjct: 1  MASGQLREELANKAREGETVVPGGTGGKSLEAQEHLAEG--------------------- 39

Query: 61 HRGGETRREQIGHEGYQEMGRKGGLSTMDKS 91
          ++GG+TR+EQIG EGYQEMGRKGGLSTMDKS
Sbjct: 40 NKGGQTRKEQIGTEGYQEMGRKGGLSTMDKS 70


>GSVIVT01032795001 assembled CDS
          Length = 93

 Score = 92.4 bits (228), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 60/92 (65%), Positives = 67/92 (72%), Gaps = 21/92 (22%)

Query: 1  MATEQE-RAELDARARQGETVVPGGTGGKSLEAQEHLAEGRSRGGQTRREQLGTEGYKEL 59
          MA+ QE RAELDA+ARQG+TVVPGGTGG SLEAQEHLAEGRSRGGQ R+EQ+G EG    
Sbjct: 1  MASRQENRAELDAKARQGQTVVPGGTGGGSLEAQEHLAEGRSRGGQARKEQIGREG---- 56

Query: 60 GHRGGETRREQIGHEGYQEMGRKGGLSTMDKS 91
                          YQEMGRKGGLST+D+S
Sbjct: 57 ----------------YQEMGRKGGLSTVDQS 72