Jatropha Genome Database

JcCB0800111.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0800111.10 + phase: 0 /pseudo
         (94 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01027798001 assembled CDS                                        83   2e-17
GSVIVT01036192001 assembled CDS                                        79   5e-16

>GSVIVT01027798001 assembled CDS
          Length = 234

 Score = 83.2 bits (204), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 35/39 (89%), Positives = 38/39 (97%)

Query: 18 RSHGNYTNPCLTMHQPWASLLVYGIKRIEGRSWPAPIRG 56
          RS GNYTNPCLT+HQPWASLLVYGIKR+EGRSWPAP+RG
Sbjct: 4  RSKGNYTNPCLTLHQPWASLLVYGIKRVEGRSWPAPLRG 42


>GSVIVT01036192001 assembled CDS
          Length = 316

 Score = 79.0 bits (193), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 35/39 (89%), Positives = 36/39 (92%)

Query: 18 RSHGNYTNPCLTMHQPWASLLVYGIKRIEGRSWPAPIRG 56
          R+  NY NPCLTMHQPWASLLVYGIKRIEGRSWPAPIRG
Sbjct: 4  RNSWNYRNPCLTMHQPWASLLVYGIKRIEGRSWPAPIRG 42