Jatropha Genome Database

JcCB0799991.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0799991.10 - phase: 0 /partial
         (112 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01015772001 assembled CDS                                       104   9e-24

>GSVIVT01015772001 assembled CDS
          Length = 386

 Score =  104 bits (259), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 50/73 (68%), Positives = 56/73 (76%)

Query: 3   VRLGTEKGSLVVKVAIVALYSLLSIFVLSNALPFTCLLLCDLTIPMGNLVVRYVEENHKD 62
           VRL TEKGS +VK+A+  LYSLL  F L+  LPFTC+  C LTIPM  LVV YVE+NHKD
Sbjct: 292 VRLDTEKGSRIVKMAMAMLYSLLLAFGLAKTLPFTCIFSCALTIPMAKLVVSYVEDNHKD 351

Query: 63  KGKIFMAKYYCVR 75
             KIFMAKYYCVR
Sbjct: 352 NSKIFMAKYYCVR 364