Jatropha Genome Database
- JcCB0796091.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0796091.10 + phase: 2 /partial
(96 letters)
Database: grape_pep_20100319
26,346 sequences; 9,959,944 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
GSVIVT01009299001 assembled CDS 164 7e-42
GSVIVT01007165001 assembled CDS 151 6e-38
GSVIVT01015095001 assembled CDS 99 4e-22
GSVIVT01016762001 assembled CDS 96 3e-21
GSVIVT01038629001 assembled CDS 93 2e-20
GSVIVT01024326001 assembled CDS 88 7e-19
GSVIVT01019913001 assembled CDS 83 3e-17
GSVIVT01033800001 assembled CDS 61 1e-10
GSVIVT01019667001 assembled CDS 54 1e-08
GSVIVT01027535001 assembled CDS 50 2e-07
>GSVIVT01009299001 assembled CDS
Length = 475
Score = 164 bits (415), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 76/96 (79%), Positives = 79/96 (82%)
Query: 1 NMHGVFTEARGPFTPSQWMELEHQALIYKYITANVPIPSNLLIPIRKALDSAXXXXXXXX 60
+MHGV RGPFT SQWMELEHQALIYKYITANVPIPSNLL+PIRKALDS
Sbjct: 48 SMHGVMAGVRGPFTQSQWMELEHQALIYKYITANVPIPSNLLMPIRKALDSVGFSTFSAG 107
Query: 61 XXRPNTLPWGTFHLGFSNNTDPEPGRCRRTDGKKWR 96
RPNTL WG+FHLGFSNNTDPEPGRCRRTDGKKWR
Sbjct: 108 ALRPNTLGWGSFHLGFSNNTDPEPGRCRRTDGKKWR 143
>GSVIVT01007165001 assembled CDS
Length = 558
Score = 151 bits (382), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 69/96 (71%), Positives = 76/96 (79%)
Query: 1 NMHGVFTEARGPFTPSQWMELEHQALIYKYITANVPIPSNLLIPIRKALDSAXXXXXXXX 60
+MHG F RGPFTPSQW+ELEHQALIYKYITANVP+PSNLLIPIRK+L+
Sbjct: 155 SMHGAFAGVRGPFTPSQWIELEHQALIYKYITANVPVPSNLLIPIRKSLNPFGLSGSSST 214
Query: 61 XXRPNTLPWGTFHLGFSNNTDPEPGRCRRTDGKKWR 96
N+L WG+FHLGFS NTDPEPGRCRRTDGKKWR
Sbjct: 215 SLAHNSLSWGSFHLGFSGNTDPEPGRCRRTDGKKWR 250
>GSVIVT01015095001 assembled CDS
Length = 387
Score = 99.0 bits (245), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 43/87 (49%), Positives = 56/87 (64%)
Query: 10 RGPFTPSQWMELEHQALIYKYITANVPIPSNLLIPIRKALDSAXXXXXXXXXXRPNTLPW 69
R PFT +QW ELEHQALI+KY+ + +PIP +L+ I+++LDS + + W
Sbjct: 7 RFPFTATQWQELEHQALIFKYMASGMPIPPDLIFSIKRSLDSPLPTSKLFPTHQSQHIGW 66
Query: 70 GTFHLGFSNNTDPEPGRCRRTDGKKWR 96
F +G DPEPGRCRRTDGKKWR
Sbjct: 67 NCFQMGLGRKVDPEPGRCRRTDGKKWR 93
>GSVIVT01016762001 assembled CDS
Length = 363
Score = 95.9 bits (237), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 47/87 (54%), Positives = 59/87 (67%), Gaps = 4/87 (4%)
Query: 10 RGPFTPSQWMELEHQALIYKYITANVPIPSNLLIPIRKALDSAXXXXXXXXXXRPNTLPW 69
R PFT SQW ELEHQALI+KYI + VPIP++L+ ++++LDS+ + W
Sbjct: 8 RSPFTASQWQELEHQALIFKYIVSGVPIPADLICTVKRSLDSSLSSRLFPH----QPIGW 63
Query: 70 GTFHLGFSNNTDPEPGRCRRTDGKKWR 96
G F +GF DPEPGRCRRTDGKKWR
Sbjct: 64 GCFQMGFGRKADPEPGRCRRTDGKKWR 90
>GSVIVT01038629001 assembled CDS
Length = 603
Score = 93.2 bits (230), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 47/86 (54%), Positives = 57/86 (66%), Gaps = 8/86 (9%)
Query: 12 PFTPSQWMELEHQALIYKYITANVPIPSNLLIPIRKALDSAXXXXXXXXXXRPNTLPWGT 71
PFT +QW ELE QA+IYKYI A+VP+P LL+PI + + +TL G+
Sbjct: 128 PFTSAQWKELERQAMIYKYIMASVPVPPELLMPITRNFSESAASPH-------STLGRGS 180
Query: 72 -FHLGFSNNTDPEPGRCRRTDGKKWR 96
F+L FSN DPEPGRCRRTDGKKWR
Sbjct: 181 IFNLRFSNGADPEPGRCRRTDGKKWR 206
>GSVIVT01024326001 assembled CDS
Length = 373
Score = 88.2 bits (217), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 42/85 (49%), Positives = 56/85 (65%), Gaps = 8/85 (9%)
Query: 12 PFTPSQWMELEHQALIYKYITANVPIPSNLLIPIRKALDSAXXXXXXXXXXRPNTLPWGT 71
PFT SQW ELEHQALI+KY+ A +P+P +L++PI+K+ +S T+ + +
Sbjct: 66 PFTVSQWQELEHQALIFKYLMAGLPVPPDLVLPIQKSFESMSSRFFHHP-----TMGYCS 120
Query: 72 FHLGFSNNTDPEPGRCRRTDGKKWR 96
F + DPEPGRCRRTDGKKWR
Sbjct: 121 F---YGKKVDPEPGRCRRTDGKKWR 142
>GSVIVT01019913001 assembled CDS
Length = 212
Score = 82.8 bits (203), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/85 (49%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 13 FTPSQWMELEHQALIYKYITANVPIPSNLLIPIRKALD-SAXXXXXXXXXXRPNTLPWGT 71
FT Q ELEHQALIYKY+ A +P+P +L+ PI K++ S P L
Sbjct: 41 FTFLQLQELEHQALIYKYMEAGLPVPYHLVYPIWKSVACSLVGLTAGAYQHHPGFLGLSP 100
Query: 72 FHLGFSNNTDPEPGRCRRTDGKKWR 96
+L + N+ DPEPGRCRRTDGKKWR
Sbjct: 101 LYLDYKNSMDPEPGRCRRTDGKKWR 125
>GSVIVT01033800001 assembled CDS
Length = 391
Score = 61.2 bits (147), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 13 FTPSQWMELEHQALIYKYITANVPIPSNLLIPIRKALDSAXXXXXXXXXXRPNTLPWGTF 72
F+ +QW ELE QALI++++ A +P LL I+K+L +
Sbjct: 50 FSLAQWQELELQALIFRHMLAGAAVPPELLQLIKKSLLNHPPYYLQHPLQHYQHYQPALL 109
Query: 73 HLGF--SNNTDPEPGRCRRTDGKKWR 96
G+ DPEPGRCRRTDGKKWR
Sbjct: 110 QSGYWGRAAMDPEPGRCRRTDGKKWR 135
>GSVIVT01019667001 assembled CDS
Length = 352
Score = 54.3 bits (129), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 35/64 (54%), Gaps = 11/64 (17%)
Query: 33 ANVPIPSNLLIPIRKALDSAXXXXXXXXXXRPNTLPWGTFHLGFSNNTDPEPGRCRRTDG 92
A+VPIP LLIPI ++L + L F N++DPEP RCRRTDG
Sbjct: 2 ASVPIPPELLIPISRSLSDVTASHSNR-----------SLDLRFPNSSDPEPWRCRRTDG 50
Query: 93 KKWR 96
KKWR
Sbjct: 51 KKWR 54
>GSVIVT01027535001 assembled CDS
Length = 402
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 31 ITANVPIPSNLLIPIRKALDSAXXXXXXXXXXR-PNTLPWGTFHLGFSNNTDPEPGRCRR 89
+ A +P+P +L++PI K++ S+ + P+ + + + N DPEPGRCRR
Sbjct: 1 MVAGLPVPVHLVLPIWKSVASSFGSTDGGIYKQYPSFIGFSPQGFDYRNVMDPEPGRCRR 60
Query: 90 TDGKKWR 96
TDGKKWR
Sbjct: 61 TDGKKWR 67