Jatropha Genome Database

JcCB0795791.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0795791.10 + phase: 0 /partial
         (217 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01010747001 assembled CDS                                       353   4e-98
GSVIVT01009190001 assembled CDS                                        60   9e-10

>GSVIVT01010747001 assembled CDS
          Length = 331

 Score =  353 bits (906), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 165/213 (77%), Positives = 186/213 (87%)

Query: 5   HHRRWAAEKLGIDATAKELEFTRKILSLDAKNYHAWSHRQWVLQALGGWEDELNYIRQLL 64
           HHRRW AEKLG DAT+KEL+FT+KILSLDAKNYHAWSHRQWVLQ LGGWEDEL+Y +QLL
Sbjct: 116 HHRRWVAEKLGSDATSKELDFTKKILSLDAKNYHAWSHRQWVLQELGGWEDELDYCKQLL 175

Query: 65  EDDVFNNSAWNQRYFVITRSPFLGGLKAMRESEVKYTIEAILANPENESPWRYLRGLYKD 124
           EDD+FNNSAWNQRYFVIT+SPFLGGL+AMRESEV YT+ AI+A PENESPWRYLRGLYKD
Sbjct: 176 EDDIFNNSAWNQRYFVITKSPFLGGLEAMRESEVNYTVGAIIAKPENESPWRYLRGLYKD 235

Query: 125 DTESWINDHQVSTVCLKVLSVKTNHIFALSTLLDLLCHGFKAKQEFRDAVDALRASDPDP 184
           D +SW+ND QVS+VCL VLS K N +FALSTLLDLLCHGF+  Q+F +AVDAL+  D D 
Sbjct: 236 DAQSWVNDPQVSSVCLTVLSAKRNTVFALSTLLDLLCHGFQPSQDFINAVDALKTPDLDQ 295

Query: 185 PEPDLAKAVCSVLERVDPMRVNYWIWRKNKRPA 217
            + +LA AVCSVL  +DPMRVNYW WRKNK PA
Sbjct: 296 SDSNLATAVCSVLGHMDPMRVNYWAWRKNKLPA 328


>GSVIVT01009190001 assembled CDS
          Length = 269

 Score = 59.7 bits (143), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 66/121 (54%), Gaps = 11/121 (9%)

Query: 5   HHRRWAAEKLGIDATAKELEFTRKILSLDAKNYHAWSHRQWVLQALGGW--EDELNYIRQ 62
           HHR+W   K G  +   EL+   +    D++N+HAW++R+++  AL G   E+EL Y  +
Sbjct: 109 HHRKWVLSK-GHSSVDHELQLLDRFQRADSRNFHAWNYRRFI-AALKGIPDEEELKYTTK 166

Query: 63  LLEDDVFNNSAWNQRYFVITR------SPFLGGLKAMRESEVKYTIEAILANPENESPWR 116
           L+E +  N SAW+ R  +++         F    K + E E ++  +A+  +P+++S W 
Sbjct: 167 LIETNFSNYSAWHNRSVLLSHLLQNKVKGFFPKEKVLVE-EYEFVHQALFTDPDDQSGWF 225

Query: 117 Y 117
           Y
Sbjct: 226 Y 226