Jatropha Genome Database

JcCB0779721.10

BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0779721.10 - phase: 0 
         (92 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01008513001 assembled CDS                                       124   8e-30
GSVIVT01009478001 assembled CDS                                        46   3e-06

>GSVIVT01008513001 assembled CDS
          Length = 281

 Score =  124 bits (311), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 55/72 (76%), Positives = 65/72 (90%)

Query: 4  GREALVACSDRSMGTGITVWDLETGDRLMHIPTCASPAHGLLCLRDQFLVASQVNKHGSV 63
          GREALV CSDRSM  GITVWD+ +GD+L+HIPTCA+  HGLLCLR+QFLVASQ+++HGS+
Sbjct: 6  GREALVVCSDRSMSVGITVWDMVSGDQLLHIPTCAASPHGLLCLREQFLVASQIHRHGSL 65

Query: 64 GGGAIFIWQLNK 75
          GGGAIFIW LNK
Sbjct: 66 GGGAIFIWPLNK 77


>GSVIVT01009478001 assembled CDS
          Length = 448

 Score = 46.2 bits (108), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 31/49 (63%), Gaps = 2/49 (4%)

Query: 4  GREALVACSDRSMGTGITVWDLETGDRLMHIPTCASPAHGLLCLRDQFL 52
          G E +VA S   +  GI+ WDL++G   +   +CASP HGL+C+ D+F 
Sbjct: 3  GTEVVVASS--PVDAGISCWDLQSGAEHLRHRSCASPPHGLVCVADRFF 49