Jatropha Genome Database

JcCB0778081.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0778081.10 - phase: 0 /partial
         (74 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01025704001 assembled CDS                                       119   3e-28
GSVIVT01003837001 assembled CDS                                        73   3e-14
GSVIVT01023949001 assembled CDS                                        69   3e-13

>GSVIVT01025704001 assembled CDS
          Length = 366

 Score =  119 bits (298), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 55/67 (82%), Positives = 63/67 (94%)

Query: 8   VVCQNMANPTALLLSAVTMLRHLELHDKADRIQNAILKTIAEGKYRTADLGGKSSTTDFT 67
           +  +NMANPTAL+LSAVTMLRHL+LHDKAD+IQNAIL TI+EG+YRTADLGG S+TTDFT
Sbjct: 300 IAGKNMANPTALMLSAVTMLRHLKLHDKADQIQNAILNTISEGRYRTADLGGSSTTTDFT 359

Query: 68  KAICDHL 74
           KAICDHL
Sbjct: 360 KAICDHL 366


>GSVIVT01003837001 assembled CDS
          Length = 308

 Score = 72.8 bits (177), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 34/63 (53%), Positives = 44/63 (69%)

Query: 8   VVCQNMANPTALLLSAVTMLRHLELHDKADRIQNAILKTIAEGKYRTADLGGKSSTTDFT 67
           +V Q  ANP ALLLS+  MLRHL+    ADR++ A+ + I+EGKYRT DLGG SST +  
Sbjct: 241 LVEQKKANPVALLLSSAMMLRHLQFPSFADRLETAVKRVISEGKYRTKDLGGDSSTQEIV 300

Query: 68  KAI 70
            A+
Sbjct: 301 DAV 303


>GSVIVT01023949001 assembled CDS
          Length = 308

 Score = 69.3 bits (168), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 32/60 (53%), Positives = 41/60 (68%)

Query: 11  QNMANPTALLLSAVTMLRHLELHDKADRIQNAILKTIAEGKYRTADLGGKSSTTDFTKAI 70
           Q  ANP ALLLS+  MLRHL+    ADR++ A+   I+EGKYRT DLGG S+T +   A+
Sbjct: 244 QKKANPVALLLSSAMMLRHLQFPSFADRLETAVKTVISEGKYRTKDLGGTSTTQEVVDAV 303