Jatropha Genome Database

JcCB0772731.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0772731.10 + phase: 0 /partial
         (239 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01012141001 assembled CDS                                       163   6e-41
GSVIVT01015884001 assembled CDS                                       159   9e-40
GSVIVT01026252001 assembled CDS                                       140   5e-34
GSVIVT01026250001 assembled CDS                                       122   1e-28
GSVIVT01014337001 assembled CDS                                       120   6e-28
GSVIVT01035402001 assembled CDS                                        93   9e-20
GSVIVT01024696001 assembled CDS                                        71   4e-13
GSVIVT01032785001 assembled CDS                                        57   9e-09

>GSVIVT01012141001 assembled CDS
          Length = 522

 Score =  163 bits (413), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 82/169 (48%), Positives = 103/169 (60%), Gaps = 4/169 (2%)

Query: 46  DEVIDKSLARKYKXXXXXXXXXXXXXXXCLPIAGKFIPALRPEKDIFFIIKAFAAGVILS 105
           +E   ++ A +YK                LP  GK IPALRPE D+FF +KAFAAGVIL+
Sbjct: 208 EEQSSRTGATRYKLAAIFSILAASLIGVALPTLGKKIPALRPENDVFFAVKAFAAGVILA 267

Query: 106 TGFIHVLPDAFENLTSPCLDENPWGKFPFTGFIAMVSAIGTLMVDAFATSYYSKSHLKNQ 165
           TGFIHVLPDAFE+LTSPCL E+PWG FPF+GF+AM+SAIGT+M+DAFAT +Y +      
Sbjct: 268 TGFIHVLPDAFESLTSPCLGESPWGSFPFSGFVAMLSAIGTMMMDAFATGFYQRLQRSKA 327

Query: 166 QSISADEEKVGDGEXXXXXXXXXXXXXXMVLAENSVTSELLRHRVISQV 214
           Q +  DEE   + +                L     + EL RHRVI+QV
Sbjct: 328 QPVKEDEEMQCENQDQVHGHPHGSGFVSGELG----SPELARHRVIAQV 372


>GSVIVT01015884001 assembled CDS
          Length = 340

 Score =  159 bits (403), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 78/123 (63%), Positives = 93/123 (75%)

Query: 28  FLLLLPSLAHGECTCEAEDEVIDKSLARKYKXXXXXXXXXXXXXXXCLPIAGKFIPALRP 87
           F++ LP+L  GEC C+ EDE  D+  A +YK               C+PI GK IPAL+P
Sbjct: 54  FIIRLPTLVLGECACDEEDEDRDRDKALRYKIAAIASILVGGTIGVCIPIIGKKIPALQP 113

Query: 88  EKDIFFIIKAFAAGVILSTGFIHVLPDAFENLTSPCLDENPWGKFPFTGFIAMVSAIGTL 147
           EK++FF+IKAFAAGVIL+TGFIHVLPDAFE+LTSPCL ENPW  FPFTGF+AM+SAIGTL
Sbjct: 114 EKNVFFVIKAFAAGVILATGFIHVLPDAFESLTSPCLSENPWANFPFTGFVAMLSAIGTL 173

Query: 148 MVD 150
           MVD
Sbjct: 174 MVD 176


>GSVIVT01026252001 assembled CDS
          Length = 348

 Score =  140 bits (353), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 75/175 (42%), Positives = 102/175 (58%), Gaps = 6/175 (3%)

Query: 40  CTCEAEDEVIDKSLARKYKXXXXXXXXXXXXXXXCLPIAGKFIPALRPEKDIFFIIKAFA 99
           C  E+++   +KS A   K               CLP+  + IPAL P++++F I+KAFA
Sbjct: 30  CQSESQNSCNNKSAALPLKLIAIASILVTSMIGVCLPLFSRSIPALAPDRNLFIIVKAFA 89

Query: 100 AGVILSTGFIHVLPDAFENLTSPCLDENPWGKFPFTGFIAMVSAIGTLMVDAFATSYYSK 159
           +G+IL+TGF+HVLPD+F+ L SPCL ENPW KFPFTGF+AM+SAI TLMVD+ ATS Y+K
Sbjct: 90  SGIILATGFMHVLPDSFDMLWSPCLKENPWHKFPFTGFVAMLSAIFTLMVDSIATSLYTK 149

Query: 160 SHLKNQQSISADEEKVGDGEXXXXXXXXXXXXXXMVLAENSVTSELLRHRVISQV 214
              KN   I  + E                     +  E    S+LLR+RV++ V
Sbjct: 150 ---KNNTGIIPEIEVADMAAGNTGGHFHGHHHGPKIGIEG---SQLLRYRVVAMV 198


>GSVIVT01026250001 assembled CDS
          Length = 349

 Score =  122 bits (306), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 68/174 (39%), Positives = 98/174 (56%), Gaps = 11/174 (6%)

Query: 42  CEAEDEVID-KSLARKYKXXXXXXXXXXXXXXXCLPIAGKFIPALRPEKDIFFIIKAFAA 100
           C    EV + K+ A K K                 PI  + +P  +P+  +F ++KAFA+
Sbjct: 36  CRVAKEVSEEKASALKLKVIAIFTILIASILGISSPILLQGMPLFKPDGKVFVLVKAFAS 95

Query: 101 GVILSTGFIHVLPDAFENLTSPCLDENPWGKFPFTGFIAMVSAIGTLMVDAFATSYYSKS 160
           GVIL+TG++HVLPD+FE LTSPCL + PW KFPFT FIAMV+A+ TLM+D+FA SYY K 
Sbjct: 96  GVILATGYVHVLPDSFECLTSPCLPDYPWSKFPFTTFIAMVAAVLTLMMDSFAMSYYRKH 155

Query: 161 HLKNQQSISADEEKVGDGEXXXXXXXXXXXXXXMVLAENSVTSELLRHRVISQV 214
            +   +    ++ + G G                V   +   S+LLR+++I+QV
Sbjct: 156 GMSEVECEHGNQIEHGHGHSRGVG----------VKKLDEEASKLLRYQIIAQV 199


>GSVIVT01014337001 assembled CDS
          Length = 354

 Score =  120 bits (301), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 63/139 (45%), Positives = 90/139 (64%), Gaps = 6/139 (4%)

Query: 76  PIAGKFIPALRPEKDIFFIIKAFAAGVILSTGFIHVLPDAFENLTSPCLDENPWGKFPFT 135
           PI  + +P L+P+  +F +IKAFA+GVIL+TG++HVLPD+ E+LTSPCL + PW KFPF+
Sbjct: 72  PILLQGMPLLKPDGKLFVLIKAFASGVILATGYVHVLPDSIESLTSPCLPQAPWSKFPFS 131

Query: 136 GFIAMVSAIGTLMVDAFATSYYSKSHLKNQQSISADEEKVGDGEXXXXXXXXXXXXXXMV 195
            FIAMV+A+ TLM+D+FA SYY K        +S  E + GD                 V
Sbjct: 132 TFIAMVAAVLTLMMDSFAMSYYKK------HGMSGAECEYGDHIENDQGHSHGHGHGVGV 185

Query: 196 LAENSVTSELLRHRVISQV 214
              +  +S+LLR+++I+QV
Sbjct: 186 KKLDDESSKLLRYQIIAQV 204


>GSVIVT01035402001 assembled CDS
          Length = 353

 Score = 93.2 bits (230), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 55/134 (41%), Positives = 74/134 (55%)

Query: 34  SLAHGECTCEAEDEVIDKSLARKYKXXXXXXXXXXXXXXXCLPIAGKFIPALRPEKDIFF 93
           S+A   C     +   D+S A   K                +P+ GK    LR + ++FF
Sbjct: 34  SMATTSCGGTDLETCRDESGALTLKFVAIAAILVAGVSGVAIPLVGKKRRFLRTDGNLFF 93

Query: 94  IIKAFAAGVILSTGFIHVLPDAFENLTSPCLDENPWGKFPFTGFIAMVSAIGTLMVDAFA 153
             KAFAAGVIL+TGF+H+LPD    L+  CL +NPW KFPF+GF AMVSA+ TL+VD   
Sbjct: 94  AAKAFAAGVILATGFVHMLPDGSTALSDSCLPKNPWSKFPFSGFFAMVSALATLVVDFVG 153

Query: 154 TSYYSKSHLKNQQS 167
           T YY +   + Q +
Sbjct: 154 TQYYERKQERTQAT 167


>GSVIVT01024696001 assembled CDS
          Length = 335

 Score = 71.2 bits (173), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 40/91 (43%), Positives = 51/91 (56%), Gaps = 4/91 (4%)

Query: 86  RPEKD-IFFIIKAFAAGVILSTGFIHVLPDAFENLTSPC--LDENPWGKFPFTGFIAMVS 142
           +P  D    IIK FAAGVILST  +HVLPDAF  L S C     +PW  FPF+G + M+ 
Sbjct: 52  KPMYDKAILIIKCFAAGVILSTSLVHVLPDAFAAL-SDCHVASHHPWKDFPFSGLVTMIG 110

Query: 143 AIGTLMVDAFATSYYSKSHLKNQQSISADEE 173
           AI  L+VD  A+++       +   I   EE
Sbjct: 111 AILALLVDLTASAHVDSHKPSHYTPIGTQEE 141


>GSVIVT01032785001 assembled CDS
          Length = 659

 Score = 56.6 bits (135), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 51/95 (53%), Gaps = 8/95 (8%)

Query: 88  EKDIFFIIKAFAAGVILSTGFIHVLPDAFENLTSPC--LDENPWGKFPFTGFIAMVSAIG 145
              +   IK  AAGVILS   +HVLP +F++L S C  +   PW   PF+G + ++ A+ 
Sbjct: 252 HSKLLLAIKCLAAGVILSISLVHVLPRSFDSL-SDCQVVSLRPWKDLPFSGIVPIIGAVT 310

Query: 146 TLMVDAFATSYYS--KSH---LKNQQSISADEEKV 175
            L+VD   + Y +   SH   +K  +  S+D +K 
Sbjct: 311 ALLVDIMQSCYGNDKSSHYAPVKTHEDSSSDGKKT 345