Jatropha Genome Database

JcCB0771211.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0771211.10 + phase: 0 /pseudo/partial
         (114 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01020207001 assembled CDS                                        85   8e-18
GSVIVT01032504001 assembled CDS                                        72   6e-14
GSVIVT01014170001 assembled CDS                                        46   4e-06

>GSVIVT01020207001 assembled CDS
          Length = 491

 Score = 84.7 bits (208), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 37/42 (88%), Positives = 39/42 (92%)

Query: 4   YIGSSCSLLVIDRGNRAIREIQLHFDDCAYQYGTGFPFGCNV 45
           YIGSSCSLLVIDRGN+AIREIQLHFDDCAYQYG+GFP G  V
Sbjct: 206 YIGSSCSLLVIDRGNQAIREIQLHFDDCAYQYGSGFPLGIAV 247


>GSVIVT01032504001 assembled CDS
          Length = 811

 Score = 72.0 bits (175), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 32/42 (76%), Positives = 35/42 (83%)

Query: 4   YIGSSCSLLVIDRGNRAIREIQLHFDDCAYQYGTGFPFGCNV 45
           YIGSSCSLLVIDRGN+AIREIQLH++DCAYQY   F  G  V
Sbjct: 205 YIGSSCSLLVIDRGNQAIREIQLHYEDCAYQYNGSFHLGIAV 246


>GSVIVT01014170001 assembled CDS
          Length = 484

 Score = 45.8 bits (107), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/31 (58%), Positives = 25/31 (80%)

Query: 4   YIGSSCSLLVIDRGNRAIREIQLHFDDCAYQ 34
           Y+  +CSLLV+DRGN A+R+I L+ +DC YQ
Sbjct: 198 YVRPTCSLLVVDRGNAALRQISLNQEDCDYQ 228