Jatropha Genome Database

JcCB0770041.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0770041.10 + phase: 1 /partial
         (142 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01031808001 assembled CDS                                       231   1e-61

>GSVIVT01031808001 assembled CDS
          Length = 398

 Score =  231 bits (588), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 111/142 (78%), Positives = 122/142 (85%), Gaps = 8/142 (5%)

Query: 1   PEIEQGLSDVAHSKVTVSFTPHLMPMVTVLHLCMSRGMQSTIYVEMASGVTTEDLYQQLK 60
           PEIEQGLSD AH+KVTVSFTPHLMPM        SRGMQSTIYVEM  GVT EDLY+QLK
Sbjct: 265 PEIEQGLSDAAHAKVTVSFTPHLMPM--------SRGMQSTIYVEMTPGVTIEDLYKQLK 316

Query: 61  VSYENEEFIKLLEKGVVPRTHDVRGSNFCYLNVFPDRIPGRAIIISVIDNLIKGASGQAL 120
           ++YE+EEF+ LLEKGVVP T +VRGSN+C LNVFPDRIPGRAII+SVIDNL+KGASGQAL
Sbjct: 317 IAYEDEEFVILLEKGVVPHTRNVRGSNYCLLNVFPDRIPGRAIIVSVIDNLVKGASGQAL 376

Query: 121 QNLNIMMGFPENTGLHNLPLFP 142
           QNLN+MMG PENTGL   PLFP
Sbjct: 377 QNLNVMMGLPENTGLLYQPLFP 398