Jatropha Genome Database

JcCB0763251.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0763251.10 + phase: 0 /partial
         (204 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01015447001 assembled CDS                                       213   6e-56
GSVIVT01008730001 assembled CDS                                        74   5e-14

>GSVIVT01015447001 assembled CDS
          Length = 370

 Score =  213 bits (541), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 97/163 (59%), Positives = 125/163 (76%)

Query: 13  SCSLKVISEANRLKGQQVFQIEKGSLDSLTQSISDNQEEAEPFYLIDLGVVIRLMDKWNQ 72
           S SL++   A +LK   V ++      +L +SIS  Q++ EPFY++DLG V+RLMD W Q
Sbjct: 69  SASLQLRLGATQLKDWDVHRVSGDGFTALIRSISQKQKDREPFYILDLGAVVRLMDMWKQ 128

Query: 73  SLPNVKPFYAVKCNTEPALLLSLATLGANFDCASQAEIETILGLGVNPDRIMYANPCKSV 132
           +LPNV P+YAVKCN +P L+ +LA+LGANFDCAS+AEIET++ LGV   +I+YANPCK  
Sbjct: 129 ALPNVVPYYAVKCNCQPPLITALASLGANFDCASRAEIETVMALGVGAQQIVYANPCKGE 188

Query: 133 SHIKYAARVGVNLTTFDSKQEVDKIKKWHPKCELLLRLKVPNE 175
           SH+KYAA VGVNLTTFDS QE+DKI  WH KC+LLLR+K PN+
Sbjct: 189 SHLKYAASVGVNLTTFDSMQEIDKIIMWHKKCDLLLRIKAPND 231


>GSVIVT01008730001 assembled CDS
          Length = 230

 Score = 73.9 bits (180), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 44/106 (41%), Positives = 62/106 (58%), Gaps = 12/106 (11%)

Query: 15  SLKVISEANRLKGQQVFQIEKGSL-DSLTQSISDNQEEAEPFYLIDLGVVIRLMDKWNQS 73
           SL+ I  A  ++G++V  + K  L D +   IS  QE  EPFY++DLGVV+ LM+KW+++
Sbjct: 7   SLQAILGAPGVRGKRVTALSKDGLTDFVLSMISKKQELKEPFYVLDLGVVVSLMEKWSRA 66

Query: 74  LPNVKPFYAVKCNTEPALLLSLA-----------TLGANFDCASQA 108
           LP V+PFYAVK   + A  L L            T G +FD A+ A
Sbjct: 67  LPLVRPFYAVKAVFDTASRLGLPRMHVLNIGGGFTSGPHFDDATSA 112