Jatropha Genome Database

JcCB0762681.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0762681.10 + phase: 0 /partial
         (107 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01031067001 assembled CDS                                       177   1e-45
GSVIVT01005052001 assembled CDS                                        57   1e-09
GSVIVT01008708001 assembled CDS                                        53   3e-08
GSVIVT01002278001 assembled CDS                                        52   6e-08
GSVIVT01033394001 assembled CDS                                        46   3e-06
GSVIVT01000266001 assembled CDS                                        46   4e-06

>GSVIVT01031067001 assembled CDS
          Length = 535

 Score =  177 bits (448), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 84/99 (84%), Positives = 91/99 (91%)

Query: 1   GAGAFEFAARKYLINEVKKTVKGRAQLGVEAFADALLVVPKTLAENSGLDTQDEIVALTG 60
           GAGAFE AAR+YL+NEVKKTV+GRAQLGVEAFADALLVVPKTLAENSGLDTQD I+ALTG
Sbjct: 413 GAGAFEVAARQYLVNEVKKTVQGRAQLGVEAFADALLVVPKTLAENSGLDTQDVIIALTG 472

Query: 61  EHDRDNIVGINLQTGGALDPQMEGIFDNYSVKRQIINSG 99
           EHDR N+VG+N  TG  +DP MEGIFDNYSVKRQIINSG
Sbjct: 473 EHDRGNVVGLNQHTGEPIDPHMEGIFDNYSVKRQIINSG 511


>GSVIVT01005052001 assembled CDS
          Length = 537

 Score = 57.4 bits (137), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/36 (72%), Positives = 27/36 (75%)

Query: 64  RDNIVGINLQTGGALDPQMEGIFDNYSVKRQIINSG 99
           R NIVG+N   G   DP MEGIFDNYSVK QIINSG
Sbjct: 444 RGNIVGLNQHKGELSDPHMEGIFDNYSVKHQIINSG 479


>GSVIVT01008708001 assembled CDS
          Length = 527

 Score = 52.8 bits (125), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 52/87 (59%), Gaps = 1/87 (1%)

Query: 14  INEVKKTVKGRAQLGVEAFADALLVVPKTLAENSGLDTQDEIVALTGEHDR-DNIVGINL 72
           ++E+ +   G+    +EAF+ AL+ +P T+A+N+GLD+ + I  L  EH + ++  GI++
Sbjct: 416 VDELARKTPGKKSHAIEAFSRALISIPTTIADNAGLDSAELIAQLRAEHHKEESHAGIDV 475

Query: 73  QTGGALDPQMEGIFDNYSVKRQIINSG 99
            +G   D    GI + + VK+ ++ S 
Sbjct: 476 ISGSVGDMAELGISEAFKVKQAVLLSA 502


>GSVIVT01002278001 assembled CDS
          Length = 562

 Score = 52.0 bits (123), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 55/103 (53%), Gaps = 5/103 (4%)

Query: 1   GAGAFEFAARKYLINEVKKTVKGRAQLGVEAFADALLVVPKTLAENSGLDTQDEIVALTG 60
           G GA +    +YL  +  +T+ G++QL + ++A AL V+P+ L +N+G D  D +  L  
Sbjct: 411 GGGAIDMEISRYL-RQHARTIAGKSQLFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQ 469

Query: 61  EHDRDN----IVGINLQTGGALDPQMEGIFDNYSVKRQIINSG 99
           +H   +    + G+++ TGG  D     +++   VK   IN+ 
Sbjct: 470 KHALPSGEGGLFGVDINTGGIADSFANFVWEPAVVKINAINAA 512


>GSVIVT01033394001 assembled CDS
          Length = 545

 Score = 46.2 bits (108), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/95 (38%), Positives = 49/95 (51%), Gaps = 5/95 (5%)

Query: 1   GAGAFEFA-ARKYLINEVKKTVKGRAQLGVEAFADALLVVPKTLAENSGLDTQDEIVALT 59
           GA A E   ARK      K+T  G  Q  +  FA++  +VPKTLAEN+GL+  + I +L 
Sbjct: 413 GAAATEIELARKLKEFSFKET--GLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLY 470

Query: 60  GEHDRDNI-VGINLQTGGAL-DPQMEGIFDNYSVK 92
            EH   N  VGI+L  G    D     ++D Y  K
Sbjct: 471 AEHSTGNTKVGIDLDQGVVCKDVSTMNVWDLYITK 505


>GSVIVT01000266001 assembled CDS
          Length = 557

 Score = 45.8 bits (107), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 3/96 (3%)

Query: 1   GAGAFEFAARKYLINEVKKTVKGRAQLGVEAFADALLVVPKTLAENSGLDTQDEIVALTG 60
           G GA E      L  +   +++G  +   EA A A   +P+TLA+N G++    + AL G
Sbjct: 410 GGGATELTVSATL-KQKSSSIEGIEKWPYEAAAVAFEAIPRTLAQNCGVNVIRTMTALQG 468

Query: 61  EH--DRDNIVGINLQTGGALDPQMEGIFDNYSVKRQ 94
           +H    +  +GI+  TG   D +   I+D Y+VK Q
Sbjct: 469 KHANGENAWMGIDGNTGAITDMKERKIWDAYNVKAQ 504