Jatropha Genome Database

JcCB0762671.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0762671.10 - phase: 0 /partial
         (82 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01032155001 assembled CDS                                        75   6e-15
GSVIVT01033285001 assembled CDS                                        64   1e-11

>GSVIVT01032155001 assembled CDS
          Length = 421

 Score = 75.1 bits (183), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 38/61 (62%), Positives = 42/61 (68%), Gaps = 10/61 (16%)

Query: 2   KVIWSKDLATSSPVPWYLPLDKNHFSFSSFRLTALGRFSQKTWYLTGNFSPLQVKALEFC 61
           +VIW KDLA  SP+PWYLPLDK+HFS SSFRLTA+GRF  K            VKALEF 
Sbjct: 319 EVIWEKDLAVGSPLPWYLPLDKSHFSLSSFRLTAVGRFITKN----------MVKALEFV 368

Query: 62  G 62
           G
Sbjct: 369 G 369


>GSVIVT01033285001 assembled CDS
          Length = 343

 Score = 63.9 bits (154), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/59 (52%), Positives = 38/59 (64%), Gaps = 10/59 (16%)

Query: 2   KVIWSKDLATSSPVPWYLPLDKNHFSFSSFRLTALGRFSQKTWYLTGNFSPLQVKALEF 60
           +V+W KD+A  SP+PWYLPLD   FS S+FR T+ GRF      +T N     VKALEF
Sbjct: 251 EVLWEKDVAADSPLPWYLPLDTTQFSLSNFRTTSFGRF------ITRNM----VKALEF 299