Jatropha Genome Database

JcCB0762541.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0762541.10 + phase: 2 /partial
         (69 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01005197001 assembled CDS                                       125   6e-30
GSVIVT01019390001 assembled CDS                                       101   5e-23
GSVIVT01024805001 assembled CDS                                        97   1e-21
GSVIVT01018314001 assembled CDS                                        48   9e-07
GSVIVT01032361001 assembled CDS                                        47   2e-06
GSVIVT01024872001 assembled CDS                                        47   2e-06
GSVIVT01016472001 assembled CDS                                        46   3e-06
GSVIVT01037771001 assembled CDS                                        46   4e-06
GSVIVT01033897001 assembled CDS                                        46   4e-06
GSVIVT01034107001 assembled CDS                                        45   5e-06
GSVIVT01024807001 assembled CDS                                        45   5e-06
GSVIVT01014553001 assembled CDS                                        45   5e-06

>GSVIVT01005197001 assembled CDS
          Length = 260

 Score =  125 bits (313), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 58/68 (85%), Positives = 63/68 (92%)

Query: 2   DAINPGNTLYVTGLSTRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDNVEA 61
           D  NPGNTLYVTGLSTRVTER LE+HFS+EGKVASCFLV+EPRTRISRGFAFVTM+ VE 
Sbjct: 85  DTSNPGNTLYVTGLSTRVTERALEDHFSREGKVASCFLVMEPRTRISRGFAFVTMETVED 144

Query: 62  ANRCVKHL 69
           ANRC+KHL
Sbjct: 145 ANRCIKHL 152


>GSVIVT01019390001 assembled CDS
          Length = 133

 Score =  101 bits (252), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 46/68 (67%), Positives = 55/68 (80%)

Query: 2   DAINPGNTLYVTGLSTRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDNVEA 61
           DA+NPGN LYVTGLSTRV   DLE++F+ EGKV  C LV +PRTR SRGF FVTM+ VE 
Sbjct: 48  DAVNPGNNLYVTGLSTRVNASDLEKYFNSEGKVVECHLVTDPRTRESRGFGFVTMETVED 107

Query: 62  ANRCVKHL 69
           A+RC+K+L
Sbjct: 108 ADRCIKYL 115


>GSVIVT01024805001 assembled CDS
          Length = 198

 Score = 97.4 bits (241), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 45/65 (69%), Positives = 52/65 (80%)

Query: 5   NPGNTLYVTGLSTRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDNVEAANR 64
           NPGN LYVTGLSTRVT+R+LE+HF+ EG VA   LV +P TR SRGF FVTM  VE ANR
Sbjct: 46  NPGNNLYVTGLSTRVTKRELEKHFASEGSVADVHLVTDPWTRESRGFGFVTMSTVEEANR 105

Query: 65  CVKHL 69
           C+K+L
Sbjct: 106 CIKYL 110


>GSVIVT01018314001 assembled CDS
          Length = 812

 Score = 48.1 bits (113), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 36/60 (60%)

Query: 10  LYVTGLSTRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDNVEAANRCVKHL 69
           ++V GL    TE DL + FS+ G+V    L++ P+T+ ++GFAF+    VE A R V  L
Sbjct: 234 VFVGGLDKDATEDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQAKRAVTEL 293


>GSVIVT01032361001 assembled CDS
          Length = 272

 Score = 47.0 bits (110), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 36/69 (52%)

Query: 1   PDAINPGNTLYVTGLSTRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDNVE 60
           P A  P   +YV  L  +V +  LE+ FS+ GKV    +V +  T+ SRGF FVTM +  
Sbjct: 180 PQAFEPSFRIYVGNLPWQVDDARLEQVFSEHGKVVDARVVYDRDTQRSRGFGFVTMSSET 239

Query: 61  AANRCVKHL 69
             N  +  L
Sbjct: 240 ELNDAIAAL 248


>GSVIVT01024872001 assembled CDS
          Length = 193

 Score = 46.6 bits (109), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 35/65 (53%)

Query: 5   NPGNTLYVTGLSTRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDNVEAANR 64
           N  N++ VT LS    E DL E F   G V+  ++ V+ +T +SRGF FV   N E A R
Sbjct: 109 NEENSVRVTNLSEDTREPDLHELFRTFGPVSRVYVAVDQKTGMSRGFGFVNFVNKEDAER 168

Query: 65  CVKHL 69
            +  L
Sbjct: 169 AINKL 173


>GSVIVT01016472001 assembled CDS
          Length = 193

 Score = 46.2 bits (108), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 35/65 (53%)

Query: 5   NPGNTLYVTGLSTRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDNVEAANR 64
           N  N++ VT LS    E DL E F   G V+  ++ ++ +T +SRGF FV   N E A R
Sbjct: 109 NEENSVRVTNLSEDTREPDLHELFRTFGPVSRVYVAIDQKTGMSRGFGFVNFVNKEDAER 168

Query: 65  CVKHL 69
            +  L
Sbjct: 169 AINKL 173


>GSVIVT01037771001 assembled CDS
          Length = 309

 Score = 45.8 bits (107), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 37/61 (60%), Gaps = 2/61 (3%)

Query: 6   PGNT--LYVTGLSTRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDNVEAAN 63
           PG T  ++V GL++ VTE D +++F + G +    ++ +  T+  RGF F+T D+ EA  
Sbjct: 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTINDVVVMYDHNTQRPRGFGFITYDSEEAVE 161

Query: 64  R 64
           R
Sbjct: 162 R 162


>GSVIVT01033897001 assembled CDS
          Length = 133

 Score = 45.8 bits (107), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 35/58 (60%)

Query: 8  NTLYVTGLSTRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDNVEAANRC 65
          + L+V GLS   TE+ L EHFS+ G+V    +V++  +  S+GF FVT  + E A + 
Sbjct: 34 SKLFVGGLSFYTTEKGLSEHFSQYGQVVEAKIVMDRVSDRSKGFGFVTFASEEEAQKA 91


>GSVIVT01034107001 assembled CDS
          Length = 194

 Score = 45.4 bits (106), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 36/65 (55%)

Query: 5   NPGNTLYVTGLSTRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDNVEAANR 64
           N  N + V+ LS    E DL E FS+ G++   ++ ++ +T +SRGF +V   N E A R
Sbjct: 110 NEENAVRVSNLSEDTHEADLRELFSRFGQLTRVYVAIDHKTGLSRGFGYVNFVNREDAER 169

Query: 65  CVKHL 69
            +  L
Sbjct: 170 AISKL 174


>GSVIVT01024807001 assembled CDS
          Length = 349

 Score = 45.4 bits (106), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 6/61 (9%)

Query: 9   TLYVTGLSTRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDNVEAANRCVKH 68
           TLYV GL  RVTE+DL +HF   G++ S  +V++      R  AFVT    E A +  + 
Sbjct: 229 TLYVGGLDARVTEQDLRDHFYAHGEIESVRMVLQ------RACAFVTYTTREGAEKAAEE 282

Query: 69  L 69
           L
Sbjct: 283 L 283


>GSVIVT01014553001 assembled CDS
          Length = 135

 Score = 45.4 bits (106), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 36/64 (56%)

Query: 6   PGNTLYVTGLSTRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDNVEAANRC 65
           P   L+V+GLS R T   L E FSK G+V +  +V +  +  S+GF FV   ++E A   
Sbjct: 39  PSTNLFVSGLSKRTTSEGLHEAFSKFGQVVNARVVTDRVSGYSKGFGFVRYVSLEDAAEG 98

Query: 66  VKHL 69
           +K +
Sbjct: 99  IKGM 102