Jatropha Genome Database

JcCB0760911.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0760911.10 - phase: 0 /partial
         (68 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01036686001 assembled CDS                                        86   4e-18
GSVIVT01019119001 assembled CDS                                        48   1e-06

>GSVIVT01036686001 assembled CDS
          Length = 535

 Score = 85.5 bits (210), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 36/45 (80%), Positives = 40/45 (88%), Gaps = 1/45 (2%)

Query: 1   FYMKTGECKFGERCKFHHPINRSAPTQAE-QQAVKLTLAGLPRRE 44
           FYMKTGECKFGERCKFHHPI+RSAPT  + QQ ++LTLAG PRRE
Sbjct: 429 FYMKTGECKFGERCKFHHPIDRSAPTATKLQQNIRLTLAGFPRRE 473


>GSVIVT01019119001 assembled CDS
          Length = 304

 Score = 47.8 bits (112), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/43 (53%), Positives = 26/43 (60%), Gaps = 4/43 (9%)

Query: 1   FYMKTGECKFGERCKFHHPINRSAPTQAEQQAVKLTLAGLPRR 43
           FYMKTG+CKFG  C+FHHP  R  PT        L+  GLP R
Sbjct: 200 FYMKTGDCKFGAVCRFHHPRERLIPT----PDCVLSPIGLPLR 238