Jatropha Genome Database

JcCB0759831.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0759831.10 + phase: 0 /pseudo/partial
         (76 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01015062001 assembled CDS                                       110   1e-25
GSVIVT01016734001 assembled CDS                                        98   8e-22

>GSVIVT01015062001 assembled CDS
          Length = 508

 Score =  110 bits (276), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 54/63 (85%), Positives = 57/63 (90%)

Query: 10  KGAPTTPLVTIAVTKLVAGVLERNNLPPAIFTSFCGGVDIGEAISKDTRIPLVSFTGSSK 69
           KGAPTTPLVTIAVTKLVA VLE+NNLP AIFTSFCGG +IGEAISKD RIPLVSFTGSSK
Sbjct: 188 KGAPTTPLVTIAVTKLVAEVLEKNNLPGAIFTSFCGGAEIGEAISKDARIPLVSFTGSSK 247

Query: 70  LSF 72
           +  
Sbjct: 248 VGL 250


>GSVIVT01016734001 assembled CDS
          Length = 485

 Score = 97.8 bits (242), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 46/63 (73%), Positives = 55/63 (87%)

Query: 10  KGAPTTPLVTIAVTKLVAGVLERNNLPPAIFTSFCGGVDIGEAISKDTRIPLVSFTGSSK 69
           KG+ TTPLVTIA+TKLVAGVL+ NNLP AIFTSFCGG  IG+A+++D RIPLVSFTG+SK
Sbjct: 196 KGSRTTPLVTIAITKLVAGVLKNNNLPGAIFTSFCGGAPIGQAMAEDKRIPLVSFTGTSK 255

Query: 70  LSF 72
           +  
Sbjct: 256 VGL 258