Jatropha Genome Database

JcCB0756571.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0756571.10 + phase: 0 /partial
         (135 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01003850001 assembled CDS                                       186   3e-48
GSVIVT01031425001 assembled CDS                                       179   3e-46

>GSVIVT01003850001 assembled CDS
          Length = 890

 Score =  186 bits (472), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 87/125 (69%), Positives = 102/125 (81%)

Query: 11  NPLLQDFEFPPFDVVEAKHVRPGIRAXXXXXXXXXXXXXRTLEPSWPKLVEPFEKIIDQL 70
           NPLL DF+FPPFD V+A HV PGIR                +EP+WPKLV+P EK++D+L
Sbjct: 12  NPLLLDFDFPPFDAVKADHVIPGIRTMLNQLENDLIELESKVEPTWPKLVDPLEKLVDRL 71

Query: 71  AVVWGAINHLKSVKDTPELRAAIEEVQPEKVKFELRLGQSKPIYNAFKAIQESPQWQSLS 130
           +VVWG +NHLKSVKD+ ELR+AIEEVQP+KVKFELRLGQSKPIYNAFKAIQESP+WQ+LS
Sbjct: 72  SVVWGIVNHLKSVKDSSELRSAIEEVQPDKVKFELRLGQSKPIYNAFKAIQESPEWQTLS 131

Query: 131 DAQKR 135
           DAQKR
Sbjct: 132 DAQKR 136


>GSVIVT01031425001 assembled CDS
          Length = 709

 Score =  179 bits (454), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 82/125 (65%), Positives = 101/125 (80%)

Query: 11  NPLLQDFEFPPFDVVEAKHVRPGIRAXXXXXXXXXXXXXRTLEPSWPKLVEPFEKIIDQL 70
           NPLL+DF FPPFDV+E KH+RP  R+              T+EP+WPKLVEP EKIID+L
Sbjct: 6   NPLLEDFVFPPFDVIEPKHIRPAFRSLLAKLESDLVELETTVEPTWPKLVEPLEKIIDRL 65

Query: 71  AVVWGAINHLKSVKDTPELRAAIEEVQPEKVKFELRLGQSKPIYNAFKAIQESPQWQSLS 130
           +VVWG +NHL SVKD+PELR+AIEEVQP KV+F+LRLGQSKPIYNAF+AI+ES  W++L+
Sbjct: 66  SVVWGIVNHLNSVKDSPELRSAIEEVQPAKVEFQLRLGQSKPIYNAFRAIRESSDWEALN 125

Query: 131 DAQKR 135
           DA+KR
Sbjct: 126 DARKR 130