Jatropha Genome Database

JcCB0756221.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0756221.10 + phase: 0 /partial
         (382 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01027938001 assembled CDS                                       330   5e-91
GSVIVT01015375001 assembled CDS                                        50   1e-06

>GSVIVT01027938001 assembled CDS
          Length = 315

 Score =  330 bits (847), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 156/186 (83%), Positives = 174/186 (93%)

Query: 197 QVDLNRAGVPLLEIVSEPDMRNGIEAAEYAAELQRMVRYLGVSNGNMQEGSLRCDVNVSI 256
           ++  + AGVPLLEIVSEPDMR+GIEA+EYAAELQR+VRYLGVSNGNMQEGSLRCDVNVS+
Sbjct: 19  EITFSLAGVPLLEIVSEPDMRSGIEASEYAAELQRLVRYLGVSNGNMQEGSLRCDVNVSV 78

Query: 257 RPIGQSEFGTKVEIKNLNSFSSINRAIDFEISRQVLLHSQGQVDSIVQETRLWEEGAQKT 316
           RPIGQ EFGTKVEIKNLNSFS++NRAIDFEISRQV LHSQGQ D IVQETRLWEEG QKT
Sbjct: 79  RPIGQLEFGTKVEIKNLNSFSAMNRAIDFEISRQVSLHSQGQSDQIVQETRLWEEGGQKT 138

Query: 317 VSMRKKEGLSDYRYFPEPDLPEVIFTKEYVDSIKNSLPDLPEIKRRRYENMGLGMQDVLF 376
           V+MRKKEGLSDYRYFPEPDLPEVI T++YV SI++SLP+LPE+KRRRYE MGL MQDVLF
Sbjct: 139 VTMRKKEGLSDYRYFPEPDLPEVILTEDYVGSIRSSLPELPELKRRRYEKMGLSMQDVLF 198

Query: 377 LANDMS 382
           LAND++
Sbjct: 199 LANDVN 204


>GSVIVT01015375001 assembled CDS
          Length = 216

 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 22/33 (66%), Positives = 28/33 (84%)

Query: 28  GAQPNSSICPICMGLPGALPVLNSKVIEFAVKL 60
           G+QPN+ ICPI MGLP  L VL+S+VIEFAV++
Sbjct: 110 GSQPNTYICPIYMGLPDTLAVLDSRVIEFAVEM 142