Jatropha Genome Database

JcCB0750271.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0750271.10 + phase: 1 /partial
         (96 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01024815001 assembled CDS                                       159   2e-40
GSVIVT01024814001 assembled CDS                                       119   4e-28

>GSVIVT01024815001 assembled CDS
          Length = 227

 Score =  159 bits (403), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 78/104 (75%), Positives = 89/104 (85%), Gaps = 8/104 (7%)

Query: 1   QDKISDFEMKLMDIDSEHLGIPEAEYHAIIRMPSAEFAKICRDLASIGDTVVISVSKEGV 60
           QDKI+DFEMKLMDIDSEHLGIPEAEYHAI+RMPS+EF +IC+DL+SIGDTVVISV+KEGV
Sbjct: 69  QDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSSEFQRICKDLSSIGDTVVISVTKEGV 128

Query: 61  KFSTRGDIGAANVVLRQNTTVDK-----VLSNN---LLSFQLQY 96
           KFSTRGDIG AN+V RQNTTVDK     V+  N    L+F L+Y
Sbjct: 129 KFSTRGDIGTANIVCRQNTTVDKPEEATVIEMNEPVSLTFALRY 172


>GSVIVT01024814001 assembled CDS
          Length = 209

 Score =  119 bits (297), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 54/79 (68%), Positives = 67/79 (84%)

Query: 5  SDFEMKLMDIDSEHLGIPEAEYHAIIRMPSAEFAKICRDLASIGDTVVISVSKEGVKFST 64
          ++FEM LMDIDSEH GI E++  A++RMPS+EF +IC+ L+SIGDTVVISV+ EGV+FST
Sbjct: 19 ANFEMNLMDIDSEHHGIDESKCCAVVRMPSSEFQRICKVLSSIGDTVVISVTNEGVQFST 78

Query: 65 RGDIGAANVVLRQNTTVDK 83
          RGDIG AN+V RQN  VDK
Sbjct: 79 RGDIGTANIVCRQNINVDK 97