Jatropha Genome Database

JcCB0746061.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0746061.10 + phase: 0 /partial
         (174 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01024318001 assembled CDS                                       177   3e-45
GSVIVT01032103001 assembled CDS                                       118   1e-27
GSVIVT01036862001 assembled CDS                                       115   1e-26
GSVIVT01032110001 assembled CDS                                       109   6e-25
GSVIVT01029057001 assembled CDS                                        99   1e-21
GSVIVT01038080001 assembled CDS                                        89   1e-18
GSVIVT01021507001 assembled CDS                                        77   4e-15

>GSVIVT01024318001 assembled CDS
          Length = 562

 Score =  177 bits (448), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 84/170 (49%), Positives = 118/170 (69%), Gaps = 1/170 (0%)

Query: 5   FLMVRPVFPPRLWNQQKYAVFADIQIGMNPVEMIFGGGSPVGLDPTKVPRIGIIPRYAKD 64
           F M  P F       ++Y VF++ QI MNP+ ++   G PV  +  KVPRIG++PRYA  
Sbjct: 303 FSMTDPTFVHDFSITKQYIVFSESQIEMNPLRLMMCKGMPVSAELDKVPRIGVLPRYAST 362

Query: 65  ESEMRWFDVPGFNLIHAINAWDEEDAVVIL-APNILSAEHTLERMELVHALVEKVRIDLK 123
           +SE+RWF+ PGFN +HAINAW+E D  +IL APN +S E+    +E VH  +EKVRI+L+
Sbjct: 363 DSEIRWFEAPGFNAMHAINAWEEGDEEIILVAPNAISIENLFHSIEKVHFSLEKVRINLR 422

Query: 124 TGIVTRNPVSARNLDFAVINPAYVGKKNKYVYAAIGDPMPKITGVVKLDV 173
           +G VTR  +S +NL+   INP+YVGK+N+Y Y  IG  +PK++GVVK+D+
Sbjct: 423 SGSVTRTTLSQKNLELGSINPSYVGKRNRYGYMGIGKMIPKMSGVVKIDL 472


>GSVIVT01032103001 assembled CDS
          Length = 546

 Score =  118 bits (296), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 56/160 (35%), Positives = 96/160 (60%), Gaps = 6/160 (3%)

Query: 20  QKYAVFADIQIGMNPVEMIFGGGSPVGLDPTKVPRIGIIPRYAKDESEMRWFDVPGFNLI 79
           + YA+F D+ +   P EM+         D TK  R G++PRYAK+E  ++WF++P   + 
Sbjct: 281 ENYAIFMDLPLYFRPKEMVKEKKLIFTFDATKKARFGVLPRYAKNELHIKWFELPNCFIF 340

Query: 80  HAINAWDEEDAVVILAPNILSAEHTL------ERMELVHALVEKVRIDLKTGIVTRNPVS 133
           H  NAW+EED VV++   + + +  L      E++E     + ++R ++KTGI ++  +S
Sbjct: 341 HNANAWEEEDEVVLITCRLENPDLDLVGGDVKEKLENFGNELYEMRFNMKTGIASQRKLS 400

Query: 134 ARNLDFAVINPAYVGKKNKYVYAAIGDPMPKITGVVKLDV 173
           A ++DF  +N +Y G+K +YVY  I D + K+TG++K D+
Sbjct: 401 ASSVDFPRVNESYTGRKQRYVYGTILDSIAKVTGIIKFDL 440


>GSVIVT01036862001 assembled CDS
          Length = 915

 Score =  115 bits (288), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 53/67 (79%), Positives = 63/67 (94%)

Query: 107 RMELVHALVEKVRIDLKTGIVTRNPVSARNLDFAVINPAYVGKKNKYVYAAIGDPMPKIT 166
           R++++HA VE VRIDLKTG+VTR+P+S RNLDFAVINP YVGKKNKYVYAA+G+PMPKI+
Sbjct: 779 RLDMIHASVEMVRIDLKTGMVTRHPLSTRNLDFAVINPGYVGKKNKYVYAAVGNPMPKIS 838

Query: 167 GVVKLDV 173
           GVVKLDV
Sbjct: 839 GVVKLDV 845



 Score = 93.6 bits (231), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 43/59 (72%), Positives = 53/59 (89%)

Query: 116 EKVRIDLKTGIVTRNPVSARNLDFAVINPAYVGKKNKYVYAAIGDPMPKITGVVKLDVS 174
            KVRIDLKTG VTR+ +S  NL+FAVINP Y+GKKN+YVY+A+GDP+PKI+G+VKLDVS
Sbjct: 376 RKVRIDLKTGTVTRHRLSQWNLEFAVINPGYLGKKNRYVYSAVGDPLPKISGIVKLDVS 434


>GSVIVT01032110001 assembled CDS
          Length = 483

 Score =  109 bits (273), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 53/157 (33%), Positives = 91/157 (57%), Gaps = 6/157 (3%)

Query: 20  QKYAVFADIQIGMNPVEMIFGGGSPVGLDPTKVPRIGIIPRYAKDESEMRWFDVPGFNLI 79
           + YA+F D+ +   P EM+         D TK  R G++PRYAK+E  ++WF++P   + 
Sbjct: 239 ENYAIFMDLPLYFRPKEMVKEKKLIFTFDATKKARFGVLPRYAKNELHIKWFELPNCFIF 298

Query: 80  HAINAWDEEDAVVILAPNI------LSAEHTLERMELVHALVEKVRIDLKTGIVTRNPVS 133
           H  NAW+EED VV++   +      L   +  E++E     + ++R ++KTGI ++  +S
Sbjct: 299 HNANAWEEEDEVVLITCRLENPDLDLVGRNVKEKLENFANELYEMRFNMKTGIASQRKLS 358

Query: 134 ARNLDFAVINPAYVGKKNKYVYAAIGDPMPKITGVVK 170
           A ++DF  +N +Y G+K +YVY  I D + ++ G V+
Sbjct: 359 ASSVDFPRVNESYTGRKQRYVYGTILDSILEVGGNVQ 395


>GSVIVT01029057001 assembled CDS
          Length = 554

 Score = 98.6 bits (244), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 54/157 (34%), Positives = 92/157 (58%), Gaps = 8/157 (5%)

Query: 24  VFADIQIGMNPVEMIFGGGSPVGLDPTKVPRIGIIPRYAKDESEMRWFDVPGFNLIHAIN 83
           V  D Q+     EM+ GG SPV  DP K+ R G++PR   DES ++W DVP     H  N
Sbjct: 311 VIPDHQVVFKLSEMVRGG-SPVIHDPNKISRFGVLPRNDPDESRIQWIDVPDCFCFHLWN 369

Query: 84  AWDEE----DAVVILAPNILSAEHTL--ERMELVHALVEKVRIDLKTGIVTRNP-VSARN 136
           AWDE     D +V++  + +S   ++  ER++ + + + ++R++L TG  +R   V+  N
Sbjct: 370 AWDERSSSGDRIVVVIGSCMSPADSIFKERVDPLRSELSEIRLNLTTGGSSRRVIVAGMN 429

Query: 137 LDFAVINPAYVGKKNKYVYAAIGDPMPKITGVVKLDV 173
           L+   ++   +G++ +Y+Y AI +P PK +G+ K+D+
Sbjct: 430 LEAGQVDKRRLGRRTRYIYLAIAEPWPKCSGMAKVDL 466


>GSVIVT01038080001 assembled CDS
          Length = 474

 Score = 89.0 bits (219), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 80/143 (55%), Gaps = 7/143 (4%)

Query: 39  FGGGSPVGLDPTKVPRIGIIPRYAKDESEMRWFDVPGFNLIHAINAWD--EEDAVVILAP 96
             GGSPV  +  K+ R G++ + A D S MRW + P     H  NAW+  E D VV++  
Sbjct: 245 LNGGSPVVYEKNKMSRFGVLDKNATDASGMRWIEAPDCFCFHLWNAWEEPETDEVVVIGS 304

Query: 97  NILSAEHTL-ERMELVHALVEKVRIDLKTGIVTRNPV----SARNLDFAVINPAYVGKKN 151
            +   +    E  E + +++ ++R++LKTG  TR P+       NL+  ++N   +G+K 
Sbjct: 305 CMTPPDSIFNECDEGLKSVLSEIRLNLKTGKSTRRPILPESEQVNLEAGMVNRNRLGRKT 364

Query: 152 KYVYAAIGDPMPKITGVVKLDVS 174
           ++ Y A+ +P PK++G  K+D+S
Sbjct: 365 QFAYLAVAEPWPKVSGFAKVDLS 387


>GSVIVT01021507001 assembled CDS
          Length = 473

 Score = 77.0 bits (188), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 76/135 (56%), Gaps = 7/135 (5%)

Query: 47  LDPTKVPRIGIIPRYAKDESEMRWFDVPGFNLIHAINAWDEEDA--VVILAPNILSAEHT 104
           L  ++  R GI+ + A+  S++ W + P     H  NAW+E +   VV++   +  A+  
Sbjct: 252 LRGSQKSRFGILAKNAQTASDIIWVESPDTFCFHLWNAWEEPETNEVVVIGSCMTPADSI 311

Query: 105 L-ERMELVHALVEKVRIDLKTGIVTRNPV----SARNLDFAVINPAYVGKKNKYVYAAIG 159
             E  E + +++ ++R++LKTG  TR P+       NL+  ++N   +G+K +Y Y AI 
Sbjct: 312 FNECEENLQSVLSEIRLNLKTGESTRRPIVPASEQVNLEAGMVNRTRLGRKTQYAYLAIA 371

Query: 160 DPMPKITGVVKLDVS 174
           +P PK++G  K+D+S
Sbjct: 372 EPWPKVSGFAKVDLS 386