Jatropha Genome Database

JcCB0745041.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0745041.10 + phase: 0 /partial
         (126 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01009430001 assembled CDS                                       241   5e-65
GSVIVT01008150001 assembled CDS                                       165   4e-42
GSVIVT01026844001 assembled CDS                                        65   7e-12

>GSVIVT01009430001 assembled CDS
          Length = 308

 Score =  241 bits (616), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 116/126 (92%), Positives = 122/126 (96%)

Query: 1   MGKWAIAVHGGAGVDPHLPQQRQEEAKQLLARCLNLGISALRSNLPAIDVVELVVRELES 60
           MG WAIAVHGGAGVDP+LP QRQEEAKQLL RCLNLGISALRS+LPAIDVVELVVRELES
Sbjct: 1   MGGWAIAVHGGAGVDPNLPPQRQEEAKQLLTRCLNLGISALRSSLPAIDVVELVVRELES 60

Query: 61  DPLFNSGRGSALTEKGTVEMEASIMDGPRRRCGAVSGLTTVKNPISLARLVMDRSPHSYL 120
           DPLFNSGRGSALTE GTVEMEASIMDGP+RRCGAVSGLTTVKNPISLARLVMD+SPHSY+
Sbjct: 61  DPLFNSGRGSALTENGTVEMEASIMDGPKRRCGAVSGLTTVKNPISLARLVMDKSPHSYM 120

Query: 121 AFSGAE 126
           AF+GAE
Sbjct: 121 AFAGAE 126


>GSVIVT01008150001 assembled CDS
          Length = 322

 Score =  165 bits (418), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 81/124 (65%), Positives = 99/124 (79%), Gaps = 1/124 (0%)

Query: 4   WAIAVHGGAGVDP-HLPQQRQEEAKQLLARCLNLGISALRSNLPAIDVVELVVRELESDP 62
           WAIA+HGGAG  P  LP +R+E  +  L  CL +G++AL++  P +DVVELVVRELE++P
Sbjct: 3   WAIALHGGAGDIPLSLPLERREPREAALRHCLQIGVAALQTKRPPLDVVELVVRELENNP 62

Query: 63  LFNSGRGSALTEKGTVEMEASIMDGPRRRCGAVSGLTTVKNPISLARLVMDRSPHSYLAF 122
            FN+GRGS LT  GTVEMEA IMDG  ++CGAVSGLTTV NPISLARLVM+++PH YLAF
Sbjct: 63  NFNAGRGSVLTTDGTVEMEACIMDGNTKKCGAVSGLTTVVNPISLARLVMEKTPHIYLAF 122

Query: 123 SGAE 126
            GAE
Sbjct: 123 DGAE 126


>GSVIVT01026844001 assembled CDS
          Length = 417

 Score = 65.1 bits (157), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 40/109 (36%), Positives = 57/109 (52%), Gaps = 2/109 (1%)

Query: 3   KWAIAVHGGAGVDPHLPQQRQEEAKQLLARCLNLGISALRSNLPAIDVVELVVRELESDP 62
           ++ +AVH GAG   H P   +     +   CL       + +   ID V   ++ LE DP
Sbjct: 7   RFFVAVHVGAGY--HAPSNEKSLRSAMKRACLAAASILRKGSGGCIDAVSAAIQILEDDP 64

Query: 63  LFNSGRGSALTEKGTVEMEASIMDGPRRRCGAVSGLTTVKNPISLARLV 111
             N+GRGS L+E G VE +ASIMDG     G+V  +  V+N I +A L+
Sbjct: 65  STNAGRGSNLSEDGHVECDASIMDGDSGAFGSVGAVPGVRNAIQIATLL 113