Jatropha Genome Database

JcCB0740621.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0740621.10 - phase: 0 
         (82 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01024029001 assembled CDS                                       109   2e-25
GSVIVT01009947001 assembled CDS                                       108   4e-25
GSVIVT01018729001 assembled CDS                                       104   1e-23
GSVIVT01020653001 assembled CDS                                        96   4e-21
GSVIVT01007804001 assembled CDS                                        89   6e-19
GSVIVT01018319001 assembled CDS                                        85   7e-18
GSVIVT01015359001 assembled CDS                                        80   1e-16

>GSVIVT01024029001 assembled CDS
          Length = 198

 Score =  109 bits (273), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 51/63 (80%), Positives = 54/63 (85%)

Query: 1   MGCSMQTMDDKQFFIDHPGAVPITAVQGEELRKLINAPAYIECSSKTQQNVKGVFDAAIR 60
           +G  +   DDKQFFIDHPGAVPIT  QGEELRKLI APAYIECSSKTQQNVK VFDAAI+
Sbjct: 116 VGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIK 175

Query: 61  VVL 63
           VVL
Sbjct: 176 VVL 178


>GSVIVT01009947001 assembled CDS
          Length = 197

 Score =  108 bits (271), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 52/82 (63%), Positives = 58/82 (70%)

Query: 1   MGCSMQTMDDKQFFIDHPGAVPITAVQGEELRKLINAPAYIECSSKTQQNVKGVFDAAIR 60
           +G  +   DDKQFF+DHPGAVPIT  QGEEL+K+I APAYIECSSKTQQNVK VFDAAI+
Sbjct: 116 VGTKLDLRDDKQFFVDHPGAVPITTAQGEELKKVIGAPAYIECSSKTQQNVKAVFDAAIK 175

Query: 61  VVLXXXXXXXXXXXXXXXCSIL 82
           VVL               CSIL
Sbjct: 176 VVLQPPKQKKKKKKAQKTCSIL 197


>GSVIVT01018729001 assembled CDS
          Length = 196

 Score =  104 bits (259), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 46/63 (73%), Positives = 55/63 (87%)

Query: 1   MGCSMQTMDDKQFFIDHPGAVPITAVQGEELRKLINAPAYIECSSKTQQNVKGVFDAAIR 60
           +G  +   +DKQFFIDHPGAVPI+A QGEEL++LI+APAYIECS+KTQQN+K VFD AIR
Sbjct: 116 VGTKLDLREDKQFFIDHPGAVPISAAQGEELKRLIDAPAYIECSAKTQQNIKAVFDQAIR 175

Query: 61  VVL 63
           VVL
Sbjct: 176 VVL 178


>GSVIVT01020653001 assembled CDS
          Length = 196

 Score = 95.5 bits (236), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 43/63 (68%), Positives = 50/63 (79%)

Query: 1   MGCSMQTMDDKQFFIDHPGAVPITAVQGEELRKLINAPAYIECSSKTQQNVKGVFDAAIR 60
           +G  +   +DKQF IDHPGA PIT  QGE+L+K+I A  YIECSSKTQQNVK VFDAAI+
Sbjct: 116 VGTKLDLREDKQFLIDHPGATPITTAQGEDLKKMIGAAVYIECSSKTQQNVKAVFDAAIK 175

Query: 61  VVL 63
           VVL
Sbjct: 176 VVL 178


>GSVIVT01007804001 assembled CDS
          Length = 210

 Score = 88.6 bits (218), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 40/63 (63%), Positives = 47/63 (74%)

Query: 1   MGCSMQTMDDKQFFIDHPGAVPITAVQGEELRKLINAPAYIECSSKTQQNVKGVFDAAIR 60
           +G  +   +DK +  DHPG VP+T  QGEELRK I A  YIECSSKTQQNVK VFDAAI+
Sbjct: 118 VGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAAYYIECSSKTQQNVKAVFDAAIK 177

Query: 61  VVL 63
           VV+
Sbjct: 178 VVI 180


>GSVIVT01018319001 assembled CDS
          Length = 198

 Score = 85.1 bits (209), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 41/63 (65%), Positives = 49/63 (77%)

Query: 1   MGCSMQTMDDKQFFIDHPGAVPITAVQGEELRKLINAPAYIECSSKTQQNVKGVFDAAIR 60
           +G  +   +DKQF +D+PGA  I+  QGEEL+K I A AYIECSSKTQQNVK VFDAAI+
Sbjct: 118 VGTKLDLREDKQFHMDYPGACTISTEQGEELKKQIGALAYIECSSKTQQNVKAVFDAAIK 177

Query: 61  VVL 63
           VVL
Sbjct: 178 VVL 180


>GSVIVT01015359001 assembled CDS
          Length = 210

 Score = 80.5 bits (197), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 39/63 (61%), Positives = 46/63 (73%)

Query: 1   MGCSMQTMDDKQFFIDHPGAVPITAVQGEELRKLINAPAYIECSSKTQQNVKGVFDAAIR 60
           +G  +   +DK +  DH G+  IT+ QGEELRK I A AYIECSSKTQQNVK VFD AI+
Sbjct: 116 VGTKLDLREDKGYLADHMGSNVITSAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIK 175

Query: 61  VVL 63
           VVL
Sbjct: 176 VVL 178