Jatropha Genome Database

JcCB0736441.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0736441.10 - phase: 0 /partial
         (270 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01002259001 assembled CDS                                       494   e-140
GSVIVT01020650001 assembled CDS                                       231   3e-61
GSVIVT01006617001 assembled CDS                                       170   6e-43
GSVIVT01011175001 assembled CDS                                        59   3e-09

>GSVIVT01002259001 assembled CDS
          Length = 687

 Score =  494 bits (1271), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 234/268 (87%), Positives = 252/268 (94%)

Query: 1   CRLILPTHDSKGVSDMGVHAFIVPIRDINTHQTLPGIEIHDCGHKIGLNGVDNGALRFSS 60
            RL+LPTHD KGVSDMGVHAFIVPIRD+ THQTLPG+EIHDCGHK+GLNGVDNGALRF S
Sbjct: 234 ARLLLPTHDIKGVSDMGVHAFIVPIRDLKTHQTLPGVEIHDCGHKVGLNGVDNGALRFHS 293

Query: 61  VRIPRDNLLNRFGDVSRDGKYTSSLPTINKRFAATLGELVGGRVGLAYSSVAVLKLAGTI 120
           VRIPRDNLLNRFGDVSRDGKYTS+LP+INKRFAATLGELVGGRV LAYSSV+VLK++ TI
Sbjct: 294 VRIPRDNLLNRFGDVSRDGKYTSNLPSINKRFAATLGELVGGRVALAYSSVSVLKVSMTI 353

Query: 121 AIRYSLLRQQFGPPKQPEVSILDYQSQQHKLMPMLASTYAFHFAAIHLVEKYSEMKKTHD 180
           AIRYSLLRQQFGPPKQPE+SILDYQS QHKLMPMLASTYAFHFA +HLV+ YSEMKK+HD
Sbjct: 354 AIRYSLLRQQFGPPKQPEISILDYQSHQHKLMPMLASTYAFHFATLHLVQMYSEMKKSHD 413

Query: 181 EQLVGDVHALSAGLKAYVTSYTAKSLSVCREACGGHGYAAVNRFGTLRNDHDIFQTFEGD 240
           +QLVGDVH+LSAGLKAYVTSYTAKSLS CREACGGHGYAAVNRFG+LRNDHDIFQTFEGD
Sbjct: 414 DQLVGDVHSLSAGLKAYVTSYTAKSLSTCREACGGHGYAAVNRFGSLRNDHDIFQTFEGD 473

Query: 241 NTVLLQQVAGDLLKQYKGEVPRWTLAVT 268
           NTVLLQQVA DLLKQY+ +    TLAVT
Sbjct: 474 NTVLLQQVAADLLKQYREKFQGGTLAVT 501


>GSVIVT01020650001 assembled CDS
          Length = 558

 Score =  231 bits (588), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 119/241 (49%), Positives = 159/241 (65%), Gaps = 6/241 (2%)

Query: 17  GVHAFIVPIRDINTHQTLPGIEIHDCGHKIGLNGVDNGALRFSSVRIPRDNLLNRFGDVS 76
           GVHAFI  IRD + +   P + + DCGHKIGLNGVDNG + F +VRIPR+NLLN   DVS
Sbjct: 122 GVHAFIAQIRDTDGN-ICPNVRVADCGHKIGLNGVDNGRIWFDNVRIPRENLLNSVADVS 180

Query: 77  RDGKYTSSLPTINKRFAATLGELVGGRVGLAYSSVAVLKLAGTIAIRYSLLRQQFG-PPK 135
            DG+Y S++   ++RFAA L  L  GRV +A S+V   K++  IAIRYSL R+ F   P 
Sbjct: 181 PDGQYLSAIKDPDQRFAAFLAPLTSGRVTIATSAVYSSKMSLAIAIRYSLTRRAFSITPN 240

Query: 136 QPEVSILDYQSQQHKLMPMLASTYAFHFAAIHLVEKYSEMKKTHDEQLVGDVHALSAGLK 195
           QPEV +LDY S Q +L+P+LA TYA  FAA +L   Y  +K+T +      +H +S+  K
Sbjct: 241 QPEVLLLDYPSHQRRLLPLLAKTYAMSFAANYLKMIY--VKRTPESN--KTIHVVSSAFK 296

Query: 196 AYVTSYTAKSLSVCREACGGHGYAAVNRFGTLRNDHDIFQTFEGDNTVLLQQVAGDLLKQ 255
           A +T +  ++L  CREACGG G    NR G ++ ++D+  TFEGDN VL+QQV+  LL +
Sbjct: 297 AILTWHNMRTLQECREACGGQGLKTENRIGQMKGEYDVQSTFEGDNNVLMQQVSKALLAE 356

Query: 256 Y 256
           Y
Sbjct: 357 Y 357


>GSVIVT01006617001 assembled CDS
          Length = 773

 Score =  170 bits (431), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 103/247 (41%), Positives = 136/247 (55%), Gaps = 11/247 (4%)

Query: 15  DMGVHAFIVPIRDINTHQTLPGIEIHDCGHKIG---LNGVDNGALRFSSVRIPRDNLLNR 71
           D GVH FIV +R +  H  LPGI I D G K G    N +DNG LRF  VRIPRD +L R
Sbjct: 307 DHGVHGFIVQLRSLEDHLPLPGITIGDIGMKFGNGGYNSMDNGVLRFDHVRIPRDQMLMR 366

Query: 72  FGDVSRDGKYTSSLPTINKRFAATLGELVGGRVGLAYSSVAVLKLAGTIAIRYSLLRQQF 131
              V+R+GK   S    N       G +V  R  +   + + L  A  IA RYS++R+QF
Sbjct: 367 VFQVTREGKCVQS----NVPRQLVYGTMVFVRQTIVSDASSALSRAVCIATRYSVVRRQF 422

Query: 132 GPPKQ-PEVSILDYQSQQHKLMPMLASTYAFHFAAIHLVEKYSEMKK---THDEQLVGDV 187
           G     PE  ++DY++QQ +L P+LAS YAF F    L   Y ++ +    +D   + + 
Sbjct: 423 GSQNGGPETQVIDYKTQQSRLFPLLASAYAFRFVGQWLKWLYMDVTQRLQANDFSTLPEA 482

Query: 188 HALSAGLKAYVTSYTAKSLSVCREACGGHGYAAVNRFGTLRNDHDIFQTFEGDNTVLLQQ 247
           HA +AGLK+  TS TA  +  CR+ CGGHGY   +    L   +    T+EGDN VLL Q
Sbjct: 483 HACTAGLKSLTTSATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQ 542

Query: 248 VAGDLLK 254
           VA  L+K
Sbjct: 543 VARFLMK 549


>GSVIVT01011175001 assembled CDS
          Length = 446

 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 86/205 (41%), Gaps = 32/205 (15%)

Query: 35  PGIEIHDCGHKIGLNGVDNGALRFSSVRIPRDNLLNRFGDVSRDGKYTSSLPTINKRFAA 94
           PG+      +KIGL  V NG ++F  V +P ++                 LP +N  F  
Sbjct: 244 PGLTATKIQNKIGLRIVQNGDIQFKKVFVPDED----------------RLPGVNS-FQD 286

Query: 95  TLGELVGGRVGLAYSSVAVLKLAGTIAIRYSLLRQQFGPPKQPEVSILDYQSQQHKLMPM 154
           T   L   RV +A+  + +   A  +  RY   R+QFG P      +  +Q  Q KL+ M
Sbjct: 287 TNKVLAVSRVMVAWQPIGISMGAYDMCHRYLKERKQFGAP------LAAFQINQQKLVEM 340

Query: 155 LASTYAFHFAAIHLVEKYSEMKKTHDEQLVGDVHALSAGLKAYVTSYTAKSLSVCREACG 214
           L +  A       L + Y + K T         HA  A  KA++T    ++L++ RE  G
Sbjct: 341 LGNIQAMTLVGWRLCKLYEKGKMTPG-------HASLA--KAWITLKARETLALGRELLG 391

Query: 215 GHGYAAVNRFGTLRNDHDIFQTFEG 239
           G+G  A         D +   T+EG
Sbjct: 392 GNGILADFLVAKAFCDLEPIYTYEG 416