Jatropha Genome Database

JcCB0736301.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0736301.10 - phase: 0 /partial
         (238 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01019667001 assembled CDS                                       140   7e-34
GSVIVT01038629001 assembled CDS                                       138   2e-33
GSVIVT01009299001 assembled CDS                                       113   8e-26
GSVIVT01007165001 assembled CDS                                       112   1e-25
GSVIVT01024326001 assembled CDS                                       107   3e-24
GSVIVT01015095001 assembled CDS                                       105   2e-23
GSVIVT01016762001 assembled CDS                                        99   2e-21
GSVIVT01033800001 assembled CDS                                        97   5e-21
GSVIVT01019913001 assembled CDS                                        91   6e-19
GSVIVT01027535001 assembled CDS                                        72   2e-13

>GSVIVT01019667001 assembled CDS
          Length = 352

 Score =  140 bits (352), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 101/246 (41%), Positives = 129/246 (52%), Gaps = 56/246 (22%)

Query: 34  MASVPIPPELLIPITKTQSNPPSSQSHALKGSLELGISGCNSDPEPWRCKRTDGKKWRCS 93
           MASVPIPPELLIPI+++ S+  +S S+    SL+L     +SDPEPWRC+RTDGKKWRCS
Sbjct: 1   MASVPIPPELLIPISRSLSDVTASHSNR---SLDLRFPN-SSDPEPWRCRRTDGKKWRCS 56

Query: 94  RDVAPDQKYCEXXXXXXXXXXXXXVELHTDSMA---------------QLLN-------- 130
           RDVAPDQKYCE             VELH++ +                Q LN        
Sbjct: 57  RDVAPDQKYCERHTHKGRPRSRKPVELHSELINNSATTTATTTSSNNKQPLNLPADTTKS 116

Query: 131 --QKSHFPNQTNSHNLSIFRSPTVSAAASYDQSRNLEWFLKGETVPVASNSNQEWRYL-- 186
              +SH  NQT  H+ S F   T+++A  Y Q R  EWF KG+TV      +Q+W+ L  
Sbjct: 117 FQDRSHLLNQTEGHHTSAFT--TLASAPPYGQVRCPEWFTKGDTV------HQQWQQLML 168

Query: 187 --KDGER-----------VYNYR-QGQ-LDSNSYLNMNLRGGHPLQAHRLNENCSLLLSP 231
             K G +           V+  R  G+ L S+S+    L   H +Q  RLN  C LLLSP
Sbjct: 169 QSKHGVKRNSPSCDKNVSVFKQRYDGEPLYSSSF--SELSAAHGVQTQRLNHQCGLLLSP 226

Query: 232 KSTSLE 237
           K  S +
Sbjct: 227 KLASFQ 232


>GSVIVT01038629001 assembled CDS
          Length = 603

 Score =  138 bits (347), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 96/282 (34%), Positives = 142/282 (50%), Gaps = 60/282 (21%)

Query: 10  NVAVPFTAAQWQELERQTMIYKYMMASVPIPPELLIPITKTQSNPPSSQSHAL-KGSLEL 68
           ++  PFT+AQW+ELERQ MIYKY+MASVP+PPELL+PIT+  S   +S    L +GS+  
Sbjct: 124 SLGFPFTSAQWKELERQAMIYKYIMASVPVPPELLMPITRNFSESAASPHSTLGRGSIFN 183

Query: 69  GISGCNSDPEPWRCKRTDGKKWRCSRDVAPDQKYCEXXXXXXXXXXXXXVELHTD-SMAQ 127
                 +DPEP RC+RTDGKKWRCSRDVA +QKYCE             VE+H D + + 
Sbjct: 184 LRFSNGADPEPGRCRRTDGKKWRCSRDVALNQKYCERHMHRGRPRSRKPVEVHADVNSSH 243

Query: 128 LLNQKSHF----------PNQTNS---------------HNLSIFRSPTVSAAA------ 156
              +  H           P  TN+               H   +F   + S A+      
Sbjct: 244 KKTRHCHALPATPATLSSPMLTNTSCSQSQYLGSALDPRHQSPVFLYKSDSKASPFTPLV 303

Query: 157 ---SYDQSRNLEWFLKGETVPVASNSNQEWRYL----------------KDGERVYN--Y 195
              S+ ++R+LEW  KGE  P+A+ S+Q+W+ L                     V+N  Y
Sbjct: 304 SVPSFKETRSLEWMAKGEAAPMAT-SDQQWQQLMQTKIGLTIESSSSICNSNASVFNQQY 362

Query: 196 RQGQLDSNSYLNMNLRGGHPLQAHRLNENCSLLLSPKSTSLE 237
           ++  ++ NSY + +    +P +     ++ ++ L+P   SL+
Sbjct: 363 QEEPINLNSYTDFSAGADNPGR-----DSINMFLNPGVISLQ 399


>GSVIVT01009299001 assembled CDS
          Length = 475

 Score =  113 bits (282), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 59/111 (53%), Positives = 70/111 (63%), Gaps = 9/111 (8%)

Query: 2   GEMNPSSMNVAVPFTAAQWQELERQTMIYKYMMASVPIPPELLIPITKTQSNPPSS--QS 59
           G M+     V  PFT +QW ELE Q +IYKY+ A+VPIP  LL+PI K   +   S   +
Sbjct: 47  GSMHGVMAGVRGPFTQSQWMELEHQALIYKYITANVPIPSNLLMPIRKALDSVGFSTFSA 106

Query: 60  HALK------GSLELGISGCNSDPEPWRCKRTDGKKWRCSRDVAPDQKYCE 104
            AL+      GS  LG S  N+DPEP RC+RTDGKKWRCSRD   DQKYCE
Sbjct: 107 GALRPNTLGWGSFHLGFSN-NTDPEPGRCRRTDGKKWRCSRDAVADQKYCE 156


>GSVIVT01007165001 assembled CDS
          Length = 558

 Score =  112 bits (281), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 58/110 (52%), Positives = 69/110 (62%), Gaps = 11/110 (10%)

Query: 4   MNPSSMNVAVPFTAAQWQELERQTMIYKYMMASVPIPPELLIPITKTQSNPPSSQSHALK 63
           M+ +   V  PFT +QW ELE Q +IYKY+ A+VP+P  LLIPI K+  NP      +  
Sbjct: 156 MHGAFAGVRGPFTPSQWIELEHQALIYKYITANVPVPSNLLIPIRKSL-NPFGLSGSSST 214

Query: 64  ---------GSLELGISGCNSDPEPWRCKRTDGKKWRCSRDVAPDQKYCE 104
                    GS  LG SG N+DPEP RC+RTDGKKWRCSRD   DQKYCE
Sbjct: 215 SLAHNSLSWGSFHLGFSG-NTDPEPGRCRRTDGKKWRCSRDAVADQKYCE 263


>GSVIVT01024326001 assembled CDS
          Length = 373

 Score =  107 bits (268), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 49/96 (51%), Positives = 63/96 (65%), Gaps = 1/96 (1%)

Query: 9   MNVAVPFTAAQWQELERQTMIYKYMMASVPIPPELLIPITKTQSNPPSSQSHALKGSLEL 68
           M  + PFT +QWQELE Q +I+KY+MA +P+PP+L++PI K+  +  S   H        
Sbjct: 61  MVRSSPFTVSQWQELEHQALIFKYLMAGLPVPPDLVLPIQKSFESMSSRFFHHPTMGY-C 119

Query: 69  GISGCNSDPEPWRCKRTDGKKWRCSRDVAPDQKYCE 104
              G   DPEP RC+RTDGKKWRCS+D  PD KYCE
Sbjct: 120 SFYGKKVDPEPGRCRRTDGKKWRCSKDAYPDSKYCE 155


>GSVIVT01015095001 assembled CDS
          Length = 387

 Score =  105 bits (262), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 49/100 (49%), Positives = 66/100 (66%), Gaps = 9/100 (9%)

Query: 13  VPFTAAQWQELERQTMIYKYMMASVPIPPELLIPITKTQSNP-------PSSQS-HALKG 64
            PFTA QWQELE Q +I+KYM + +PIPP+L+  I ++  +P       P+ QS H    
Sbjct: 8   FPFTATQWQELEHQALIFKYMASGMPIPPDLIFSIKRSLDSPLPTSKLFPTHQSQHIGWN 67

Query: 65  SLELGISGCNSDPEPWRCKRTDGKKWRCSRDVAPDQKYCE 104
             ++G+ G   DPEP RC+RTDGKKWRC+++  PD KYCE
Sbjct: 68  CFQMGL-GRKVDPEPGRCRRTDGKKWRCAKEAYPDSKYCE 106


>GSVIVT01016762001 assembled CDS
          Length = 363

 Score = 98.6 bits (244), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 46/95 (48%), Positives = 66/95 (69%), Gaps = 5/95 (5%)

Query: 14  PFTAAQWQELERQTMIYKYMMASVPIPPELLIPITKTQSNPPSSQSHALK----GSLELG 69
           PFTA+QWQELE Q +I+KY+++ VPIP +L+  + ++  +  SS+    +    G  ++G
Sbjct: 10  PFTASQWQELEHQALIFKYIVSGVPIPADLICTVKRSLDSSLSSRLFPHQPIGWGCFQMG 69

Query: 70  ISGCNSDPEPWRCKRTDGKKWRCSRDVAPDQKYCE 104
             G  +DPEP RC+RTDGKKWRCS++  PD KYCE
Sbjct: 70  F-GRKADPEPGRCRRTDGKKWRCSKEAYPDSKYCE 103


>GSVIVT01033800001 assembled CDS
          Length = 391

 Score = 97.4 bits (241), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 54/117 (46%), Positives = 66/117 (56%), Gaps = 9/117 (7%)

Query: 15  FTAAQWQELERQTMIYKYMMASVPIPPELLIPITKTQSN-PPSSQSHALK-------GSL 66
           F+ AQWQELE Q +I+++M+A   +PPELL  I K+  N PP    H L+         L
Sbjct: 50  FSLAQWQELELQALIFRHMLAGAAVPPELLQLIKKSLLNHPPYYLQHPLQHYQHYQPALL 109

Query: 67  ELGISG-CNSDPEPWRCKRTDGKKWRCSRDVAPDQKYCEXXXXXXXXXXXXXVELHT 122
           + G  G    DPEP RC+RTDGKKWRCSRDV   QKYCE             VE+ T
Sbjct: 110 QSGYWGRAAMDPEPGRCRRTDGKKWRCSRDVVTGQKYCERHMHRGRNRSRKPVEIPT 166


>GSVIVT01019913001 assembled CDS
          Length = 212

 Score = 90.5 bits (223), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 49/98 (50%), Positives = 60/98 (61%), Gaps = 8/98 (8%)

Query: 15  FTAAQWQELERQTMIYKYMMASVPIPPELLIPITKTQS------NPPSSQSH-ALKGSLE 67
           FT  Q QELE Q +IYKYM A +P+P  L+ PI K+ +         + Q H    G   
Sbjct: 41  FTFLQLQELEHQALIYKYMEAGLPVPYHLVYPIWKSVACSLVGLTAGAYQHHPGFLGLSP 100

Query: 68  LGISGCNS-DPEPWRCKRTDGKKWRCSRDVAPDQKYCE 104
           L +   NS DPEP RC+RTDGKKWRCS++  PDQKYCE
Sbjct: 101 LYLDYKNSMDPEPGRCRRTDGKKWRCSKEAVPDQKYCE 138


>GSVIVT01027535001 assembled CDS
          Length = 402

 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 38/80 (47%), Positives = 49/80 (61%), Gaps = 8/80 (10%)

Query: 33  MMASVPIPPELLIPITKTQSNPPSS-------QSHALKGSLELGISGCNS-DPEPWRCKR 84
           M+A +P+P  L++PI K+ ++   S       Q  +  G    G    N  DPEP RC+R
Sbjct: 1   MVAGLPVPVHLVLPIWKSVASSFGSTDGGIYKQYPSFIGFSPQGFDYRNVMDPEPGRCRR 60

Query: 85  TDGKKWRCSRDVAPDQKYCE 104
           TDGKKWRCS+DV PDQKYCE
Sbjct: 61  TDGKKWRCSKDVVPDQKYCE 80



 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 28/45 (62%), Positives = 32/45 (71%), Gaps = 9/45 (20%)

Query: 68  LGISGCNS---------DPEPWRCKRTDGKKWRCSRDVAPDQKYC 103
           L + GC+S         +PEP RC+RTDGKKWRCSRDV PDQKYC
Sbjct: 281 LQVMGCSSSCFDYRNYAEPEPGRCRRTDGKKWRCSRDVVPDQKYC 325