Jatropha Genome Database

JcCB0735811.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0735811.10 + phase: 0 
         (127 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01017973001 assembled CDS                                        82   4e-17

>GSVIVT01017973001 assembled CDS
          Length = 225

 Score = 82.4 bits (202), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 42/63 (66%), Positives = 50/63 (79%), Gaps = 4/63 (6%)

Query: 56  ASSSQDNGSTVTSSPIESVGREGRIGEVKRVTRETNVSVNINLDGTGIADSSTGIPFLDH 115
           ASS  +NGS + SS I    R GRIGEVKRVT+ETNV V++NLDG+G+A + TGIPFLDH
Sbjct: 10  ASSVDENGSPIMSSSI----RTGRIGEVKRVTKETNVMVSMNLDGSGVAQNDTGIPFLDH 65

Query: 116 MLD 118
           MLD
Sbjct: 66  MLD 68