Jatropha Genome Database

JcCB0735771.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0735771.10 + phase: 2 /TE/pseudo/partial
         (207 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01022113001 assembled CDS                                       297   2e-81

>GSVIVT01022113001 assembled CDS
          Length = 1561

 Score =  297 bits (761), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 146/190 (76%), Positives = 163/190 (85%), Gaps = 7/190 (3%)

Query: 1   SPMLASEWKKPGMLSHFTVVRKLEGGIFPMGFSKEVTERNTNAGSNVLAIESSERALLNR 60
           SPML SEWK+PG+LSHFTVVRKL+GGIFPMGF   +        S +L     ERALLNR
Sbjct: 594 SPMLPSEWKRPGVLSHFTVVRKLDGGIFPMGFQLNILFFGKIYHSKIL-----ERALLNR 648

Query: 61  LMIALSKLDSDVLVGHNISGFDLDVLLHRAQACRVPSSMWSKIGRLKRSAMPKLTKGNSI 120
           LMI L KLDSDVLVGHNISGFDLDVLLHRA+AC+VP  MWSKIGRLKR  MPKLT+G++I
Sbjct: 649 LMIELYKLDSDVLVGHNISGFDLDVLLHRAEACKVP--MWSKIGRLKRRVMPKLTRGSTI 706

Query: 121 FGSGASPGIMSCIAGRLLCDTYLCSRDLLKEVSYSLTQLARTRLNKDRKEIAPHDIPGMF 180
           FGSGASPGIMSCIAGRLLCDTYLCSRDLLKEVSYSLTQLA+T+LNKDRKEIAP D+  MF
Sbjct: 707 FGSGASPGIMSCIAGRLLCDTYLCSRDLLKEVSYSLTQLAKTQLNKDRKEIAPQDVSRMF 766

Query: 181 QTSKSLIELV 190
           QTS+SL++L+
Sbjct: 767 QTSESLVQLI 776